Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 377 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 77 / 5e-16 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT2G17845 76 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 74 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 75 / 4e-15 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 75 / 4e-15 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT1G67730 72 / 3e-14 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT3G55310 72 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 455 / 9e-163 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 208 / 6e-66 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 83 / 5e-18 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.008G149201 [exp] 73 / 9e-15 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G048800 [exp] 69 / 3e-13 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 68 / 6e-13 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.010G056100 [exp] 67 / 1e-12 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 67 / 2e-12 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.008G014200 [exp] 67 / 3e-12 AT5G04900 511 / 0.0 NYC1-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004925 [exp] 395 / 1e-139 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 355 / 8e-124 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 336 / 3e-116 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 322 / 5e-111 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 308 / 3e-105 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 292 / 3e-99 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 207 / 8e-66 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031448 [exp] 80 / 1e-16 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 79 / 2e-16 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10026260 [exp] 71 / 3e-14 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.005G080900.1 pacid=42802769 polypeptide=Potri.005G080900.1.p locus=Potri.005G080900 ID=Potri.005G080900.1.v4.1 annot-version=v4.1 ATGGAGTCCTATGGCCAAGTAGTGGTTTTAATTACTGGTTGCACCCAAGGTGGTATAGGTCATGCCTTGGCACGTGAATTTGCTGCTAACAACTGCCTTG TTGTGGCCACGGCCAGGTCATTGACTTCCATGAGAGACCTTGATCAAGATACCAGATTTTTTCTCCAAGAATTGGATGTTTTGTCTGATGAAAGTGTGCA GAATGTTGTGTCGAATGTTGTTGAAAGATATGGCAGAGTTGATATTTTGGTTAACAATGCTGGGATTCAATGTGTTGGCCCACTTGCTGAGATCCCTTTA TCAGCTGCGCAAAACACTTTCGATACCAATGTTTTTGGTACCATGAGGATGGTTCAAGCTGTTGTTCCTCACATGGCATCTAGGAAGAAGGGGAAAATCT TAAATGTTGGAAGTGCTTCTGTTTTGGCTCCTCTTCCATGGGCTGGTGTCTATACTGCAACCAAAGCAGCTCTTCATTCACTAACTGATAACATGAGGCT GGAACTTAGGCTTTTTGGGATCCAGGTGATCAATGTTGTTCCTGGAGCTGTTAAATCAAACATCGGAAATTCTGCCATATCCAGCTACAACCATATGCCT GAGTGGAGATTATACAAGCCATTTGAAGCAGCTATATGGAACAGGGCTTGCCTTTTCCAGGGACCTAAGACCACCCCCACCGAAGAGTTTGCGAAGAAGA CGGTTGCTACTGTGCTAAAGAAAAATCCACCAGCATGGTTTTCCTTTGGCCGATTCTCTACTATCTTGTCGATCATGTATCATTTGCCACTTTATGTTAA AGATTGTATCGCAAGGCAAGTATTTAAAAGCATGTTTGAAACCAATTCCACACCAAGATTTAGTTCAAATCGTTAA
AA sequence Show only first row Show all	>Potri.005G080900.1 pacid=42802769 polypeptide=Potri.005G080900.1.p locus=Potri.005G080900 ID=Potri.005G080900.1.v4.1 annot-version=v4.1 MESYGQVVVLITGCTQGGIGHALAREFAANNCLVVATARSLTSMRDLDQDTRFFLQELDVLSDESVQNVVSNVVERYGRVDILVNNAGIQCVGPLAEIPL SAAQNTFDTNVFGTMRMVQAVVPHMASRKKGKILNVGSASVLAPLPWAGVYTATKAALHSLTDNMRLELRLFGIQVINVVPGAVKSNIGNSAISSYNHMP EWRLYKPFEAAIWNRACLFQGPKTTPTEEFAKKTVATVLKKNPPAWFSFGRFSTILSIMYHLPLYVKDCIARQVFKSMFETNSTPRFSSNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.005G080900 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	4.47	0.9622
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	6.00	0.9625
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	7.87	0.9628
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	8.36	0.9393
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001300 [exp]	9.79	0.9501
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	11.48	0.9602
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	13.22	0.9544
AT4G22030			F-box family protein with a do...		Potri.004G009300 [exp]	17.29	0.9357
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071200 [exp]	22.75	0.9356
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	25.47	0.9393

Compare expression of checked genes

Potri.005G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.