Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 455 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 363 / 3e-125 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 361 / 4e-124 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 325 / 2e-110 ATSEH soluble epoxide hydrolase (.1) AT4G15955 322 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 317 / 3e-107 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 278 / 4e-92 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 59 / 1e-09 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G33180 55 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 54 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202700 [exp] 459 / 2e-163 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 457 / 7e-163 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 392 / 8e-137 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 390 / 6e-136 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 384 / 1e-133 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 374 / 6e-130 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 300 / 6e-101 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 192 / 7e-59 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 187 / 3e-58 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026141 [exp] 417 / 6e-147 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 409 / 2e-143 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 394 / 9e-138 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 377 / 4e-131 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 372 / 7e-129 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 364 / 1e-125 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 359 / 7e-124 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 356 / 9e-123 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 353 / 1e-121 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 342 / 9e-118 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.005G081000.1 pacid=42804582 polypeptide=Potri.005G081002.1.p locus=Potri.005G081000 ID=Potri.005G081000.1.v4.1 annot-version=v4.1 ATGGATAAGATAGAGCACATTACAGTTGCCACAAATGGCATAAACATGCACGTAGCTTCAATAGGGACGGGCCCAGTTATCCTCTTCTTGCATGGGTTCC CTGAACTCTGGTATTCATGGCGACACCAACTCCTCCATCTTTCGTCCCTCGGTTACCGTTGCGTTGCCCCAGATCTTCGTGGATATGGTGACACAGATGC TCCTGAATCAGCTAGCCAGTACACCGGTCTCCACGTCGTTGGTGACCTGATAGGTCTTCTCGACTCCTTCGGGATTGATCAAGTGTTTCTGGTTGGCCAT GATTGGGGGGCTATGATTGCTTGGTACTTGTGCTTGCTTAGACCTGACAGGGTTAGGGCCTTGGTCAACTTGAACGTTGCATTCATGGCTAGAGACCCGA AAACTATTAACCCCATGGAGGTTTTGAAGAGTATTTATGGTGAGGATTACTATGCCTGCAGGTTTCAGGAACCTGGGCCTGGAGAGATTGAAAAAGACTT TGCTCAAGTTGCCACTGCAAAAATGTTGAGGATATTCTTTTCAAGTTTCGGTCCGAAGCCCTTAATAGTGCCCAAGGAAACAGGATTCAGAGGCATACCT GATCCTCCATGCTTGCCTCTTGGATTTTCAGAAGAAGATATCGATTTTTACGCCAACAAGTTTAACCAAAAAGGATTCACTGGAGCTTTAAATTATTATC GAGCCATCAATCAAACTTGGGACCTCATGGCACCATGGATTGGGGTAAAAATCCAAGTACCTGTTAAGTTTATTATAGGTGATCAGGACATCAACTACCA CCTTCCAGGGCTAAAGGAATACATACTCAACGGCGGGTTCAAGAAAGATGTGCCACGTTTGGAAGAAGTGGTTGTAATGGGAGGAGTAGCCCACTTTCCG AACCAAGCAAGGCCGGCAGAAGTCAGTGAACACATCTATAGCTTTTTCAAGAAGCTTCAGTTTAGCAATAATAATCCCAGGGCCAATAGTACTACATCAT CACTCAATGGAAATAGAGTCTCGGATCTAGCTCACTTGCATGCCTTGTAA
AA sequence Show only first row Show all	>Potri.005G081000.1 pacid=42804582 polypeptide=Potri.005G081002.1.p locus=Potri.005G081000 ID=Potri.005G081000.1.v4.1 annot-version=v4.1 MDKIEHITVATNGINMHVASIGTGPVILFLHGFPELWYSWRHQLLHLSSLGYRCVAPDLRGYGDTDAPESASQYTGLHVVGDLIGLLDSFGIDQVFLVGH DWGAMIAWYLCLLRPDRVRALVNLNVAFMARDPKTINPMEVLKSIYGEDYYACRFQEPGPGEIEKDFAQVATAKMLRIFFSSFGPKPLIVPKETGFRGIP DPPCLPLGFSEEDIDFYANKFNQKGFTGALNYYRAINQTWDLMAPWIGVKIQVPVKFIIGDQDINYHLPGLKEYILNGGFKKDVPRLEEVVVMGGVAHFP NQARPAEVSEHIYSFFKKLQFSNNNPRANSTTSSLNGNRVSDLAHLHAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.005G081000 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	3.74	0.9911
AT4G24275			unknown protein		Potri.004G224600 [exp]	6.32	0.9889
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041700 [exp]	9.48	0.9893	Pt-PRP4.3
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	11.48	0.9798
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	12.48	0.9840	SP1.2
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	15.49	0.9817
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	18.43	0.9789
AT3G52500			Eukaryotic aspartyl protease f...		Potri.009G162400 [exp]	20.49	0.9792
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	21.07	0.9867
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.004G093800 [exp]	22.36	0.9270

Compare expression of checked genes

Potri.005G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.