Plant FIBer expression Database

Potri.005G081100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G086400
[exp]
57 / 3e-12 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G081100.1 pacid=42804627 polypeptide=Potri.005G081100.1.p locus=Potri.005G081100 ID=Potri.005G081100.1.v4.1 annot-version=v4.1
ATGTCTTCCATTGGAGTTGCTTGTGCTGAAGTTTACGTCAAGCAAAAACGTCAGATGGAGAAAATGAAGAGAATGGAGGAGGAAAGAGTGAGAAGAGGAG
AGAATATTGTAATTGACGAGAGGACACTTGGTGGTTCTACTTCTACGAGTGGAAAGGGCAAGAACAAGGTCCATCCAGGTAATTTTCCTGGCTCGGAACG
TGGAGGGAAGCAAGGAGAAGCGAGGGATAATGTGGCATAA
AA sequence
>Potri.005G081100.1 pacid=42804627 polypeptide=Potri.005G081100.1.p locus=Potri.005G081100 ID=Potri.005G081100.1.v4.1 annot-version=v4.1
MSSIGVACAEVYVKQKRQMEKMKRMEEERVRRGENIVIDERTLGGSTSTSGKGKNKVHPGNFPGSERGGKQGEARDNVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G081100
[exp]
0 1
AT4G35270 NLP2 Plant regulator RWP-RK family ... Potri.009G166400
[exp]
1.00 0.9836
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.002G080400
[exp]
4.47 0.9629
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.011G001401
[exp]
5.19 0.9704
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Potri.003G191500
[exp]
6.70 0.9556
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Potri.002G052100
[exp]
6.92 0.9637 CPS.1
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.011G001300
[exp]
10.39 0.9529
AT2G45220 Plant invertase/pectin methyle... Potri.012G126800
[exp]
12.48 0.9230 Pt-PME.6
AT1G62510 Bifunctional inhibitor/lipid-t... Potri.001G158400
[exp]
13.19 0.9037 Pt-HPS.2
AT1G27040 Major facilitator superfamily ... Potri.002G129500
[exp]
14.89 0.9609
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Potri.004G208700
[exp]
15.90 0.9534

Potri.005G081100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.