Plant FIBer expression Database

Potri.005G081400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65207 50 / 5e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G086000
[exp]
125 / 2e-39 AT5G65207 44 / 1e-07 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G081400.1 pacid=42804387 polypeptide=Potri.005G081400.1.p locus=Potri.005G081400 ID=Potri.005G081400.1.v4.1 annot-version=v4.1
ATGTCTGACATTGCTATGCTGGTTGCAGAGGAGTATGAAAGGAGAGTCAAGCATTCAAGAAAGGCTGCAGGTGGAGAAGGAGATATGGAGATTAACCGGG
TTTCTTGTGCCTCTGTCAGGTTTCGGAGGATAAAGAGTAAGATAGGGAAAGAGAAGATGGAACTTCTCAAGATGGCTTTGGAGCCTAAGAGTTCGATGGG
TCTTGCAGCATCCGATGGCTTCTTTTCTGCTTGA
AA sequence
>Potri.005G081400.1 pacid=42804387 polypeptide=Potri.005G081400.1.p locus=Potri.005G081400 ID=Potri.005G081400.1.v4.1 annot-version=v4.1
MSDIAMLVAEEYERRVKHSRKAAGGEGDMEINRVSCASVRFRRIKSKIGKEKMELLKMALEPKSSMGLAASDGFFSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65207 unknown protein Potri.005G081400
[exp]
0 1
AT5G14410 unknown protein Potri.001G342100
[exp]
2.00 0.9614
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G227900
[exp]
2.44 0.9550
AT3G50180 Plant protein of unknown funct... Potri.016G039800
[exp]
4.69 0.9386
Potri.001G021300
[exp]
4.89 0.9493
AT1G03670 ankyrin repeat family protein ... Potri.019G101500
[exp]
6.63 0.9481
Potri.008G169450
[exp]
8.77 0.9455
AT1G14440 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, hom... Potri.002G035200
[exp]
8.94 0.9481
AT3G60120 BGLU27 beta glucosidase 27 (.1) Potri.005G059500
[exp]
10.48 0.9398
AT3G18080 BGLU44 B-S glucosidase 44 (.1) Potri.015G041300
[exp]
11.48 0.9352
AT2G30370 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen... Potri.019G128200
[exp]
13.96 0.9322

Potri.005G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.