Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41060 213 / 7e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 211 / 1e-63 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT3G15010 184 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 160 / 2e-45 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22100 132 / 1e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G19380 134 / 2e-34 RNA recognition motif (RRM)-containing protein (.1) AT1G22330 79 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G53680 76 / 6e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22910 76 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G47620 76 / 7e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025600 [exp] 228 / 5e-70 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G023800 [exp] 219 / 1e-66 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 216 / 2e-65 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G377400 [exp] 200 / 6e-60 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 171 / 2e-49 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 169 / 3e-49 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 167 / 5e-48 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 166 / 8e-48 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 81 / 1e-16 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043016 [exp] 222 / 9e-68 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032516 [exp] 219 / 3e-67 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 175 / 8e-51 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 174 / 3e-50 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 163 / 1e-46 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 155 / 1e-41 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 80 / 2e-16 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 77 / 3e-15 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 77 / 3e-15 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 77 / 5e-15 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G081600.2 pacid=42805457 polypeptide=Potri.005G081600.2.p locus=Potri.005G081600 ID=Potri.005G081600.2.v4.1 annot-version=v4.1 ATGGCAAAAACCGAAAAAACTAAGAAACTCAAGACCGCCAAAAAACCAGAAACCACCACCAAACAGAAACCGCTAAAGAAACCCAAACTCAAGATACGAA AAACCAAACCCCTCCCTTCAGACCCTGCCGATCTCTCAACCCTTCTCGAACCCTACACAAAAGACCAATTAATCGACCTAATTACCAACTCTGCCATTAA GAACCCCTCTTTGTATTCTCTAATTCATCAACACGCCGACCGCGATGTCACTCACCGGAATGTTTTTGTCCACGGCTTCTCCTGGGACACAACGCGCCAA GACCTCGTATCTGCCTTCGCCGCCTTCGGAGAAATCGAGGAATGCAATGTTGTAATTGATAAAGCAACAGGTAAAGCAAAAGGCTATGGTTTTGTCTTGT TTAAATCGCGAAAAGCTGCGATCTCTGCGTTGAAGGAAACGAAAAGAATGGTTAATGATCGGATGGCTAGTTGTCAATTGGCTTCTGTAGGATCTGCTAA TGCGGCCTCGGCGGCCAAAGGGAAGGAATTGGAGGGTGGGGTGAGGAAGATATTTGTGAGTAATGTAGGAATGAGTACTGATAAGGAAAAGTTGAGAGCT TTCTTTGAGAAATTCGGAGAAATTGAGAATGGGCCAATTGGGTTTGATAAGGAGACTGGGAAGTCAAGAGGTTATGCTTTGTTTGTTTATAAGACCGTGG AGGGAGCCATAAAGGCATTAGAGGAGCCTCATAAGATATTTGAAGGGCAGCAATTGCGTTGCTCGGTCGCGACAGAAGGAAAAAACAAGACTAATCAAAA TGTGGCGCAGGGAATGCAGCAGGTGGTACAGCAGCAGCCGGTGCATCAACAGCCTCAAGGGCAGTTTTTGGCAGCGGCGCAGAATCTGGCATTGTTTGGT CAGCATCCTGGGTTTAATCCACTGTATAGCGCATTGTTGGGGAGCACAGGTGTTGGTGGTGGCATGATCAGTCCAGTAATCGGCCAGAGTATGGTGCCAA CTGCGACGAGTCAAGTGGGGGGATTGGGAGTTGGGAGCCAGTCAACACTGGAGGCATATAGGGCTGCGCAAGTGTTGCAGCATGTTTATTCGAGCACTAC GCAGATTGGGCAGACAGGGATGGGTAGGGGTCAGGGGGCTGGTGGATCATTTACCGGCTATCCAAAATATATGTGA
AA sequence Show only first row Show all	>Potri.005G081600.2 pacid=42805457 polypeptide=Potri.005G081600.2.p locus=Potri.005G081600 ID=Potri.005G081600.2.v4.1 annot-version=v4.1 MAKTEKTKKLKTAKKPETTTKQKPLKKPKLKIRKTKPLPSDPADLSTLLEPYTKDQLIDLITNSAIKNPSLYSLIHQHADRDVTHRNVFVHGFSWDTTRQ DLVSAFAAFGEIEECNVVIDKATGKAKGYGFVLFKSRKAAISALKETKRMVNDRMASCQLASVGSANAASAAKGKELEGGVRKIFVSNVGMSTDKEKLRA FFEKFGEIENGPIGFDKETGKSRGYALFVYKTVEGAIKALEEPHKIFEGQQLRCSVATEGKNKTNQNVAQGMQQVVQQQPVHQQPQGQFLAAAQNLALFG QHPGFNPLYSALLGSTGVGGGMISPVIGQSMVPTATSQVGGLGVGSQSTLEAYRAAQVLQHVYSSTTQIGQTGMGRGQGAGGSFTGYPKYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	0	1
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	1.41	0.8564
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.004G106750 [exp]	3.00	0.8719
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.014G051200 [exp]	3.46	0.8377
AT4G08960			phosphotyrosyl phosphatase act...		Potri.002G099000 [exp]	6.00	0.8203
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.012G058200 [exp]	6.32	0.8317	Pt-DR1.2
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	6.48	0.8556
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.008G145700 [exp]	7.48	0.8534
AT2G36090			F-box family protein (.1)		Potri.006G208400 [exp]	9.00	0.8301
AT5G58020			unknown protein		Potri.006G186900 [exp]	13.07	0.8039
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.005G170800 [exp]	14.00	0.8361

Compare expression of checked genes

Potri.005G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.