Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STGA1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 506 / 0 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 496 / 9e-177 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 386 / 1e-133 bZIP bZIP transcription factor family protein (.1) AT1G22070 383 / 3e-132 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 306 / 2e-102 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 301 / 1e-100 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G08320 297 / 1e-98 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06960 293 / 2e-97 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 296 / 6e-97 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06839 292 / 7e-96 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085700 [exp] 660 / 0 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.002G090700 [exp] 442 / 8e-156 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.005G170500 [exp] 431 / 2e-151 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 382 / 6e-134 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.003G194600 [exp] 332 / 2e-110 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 329 / 1e-109 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 328 / 2e-109 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 318 / 7e-106 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G039000 [exp] 319 / 8e-106 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035873 [exp] 501 / 1e-178 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 488 / 9e-174 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 478 / 1e-168 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10025789 [exp] 443 / 2e-156 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10009055 [exp] 391 / 3e-135 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10042005 [exp] 383 / 2e-132 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 381 / 2e-131 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10031349 [exp] 375 / 3e-129 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10026166 [exp] 330 / 7e-112 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 328 / 2e-111 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.005G082000.7 pacid=42805074 polypeptide=Potri.005G082000.7.p locus=Potri.005G082000 ID=Potri.005G082000.7.v4.1 annot-version=v4.1 ATGAATTCTACATCCACTCAGTTCGTAACCTCCGGAAGGATGGGCATTTATGACCCTATGCACCAGATTGGTATGTGGGGAGAAAACTTCAAGAGTAATA GAAATACAAGTACTTCTACTATGTTTATAGCAGGTAATCCAAATCCATCTGCATCGATAATTATAGCACCAGACACAAAGCTAGACAATCAGTCAGAGGA TACTTCACAAGGTACGCTTGGACCTTCTAACAAGTATGATCAAGAAGCATCTAAGCCTTCTGATAAGGTGCAAAGACGTCTTGCACAAAATCGCGAGGCT GCTCGTAAAAGCCGTTTACGGAAGAAGGCTTATGTTCAGCAGTTAGAATCAAGTCGTACGAAGCTCCTTCAGTTGGAGCAGGAGCTTGACAGAGCTAGAC AACAGGGCCTGTATATAGGTGGTGGAGTAGATACCAGTCAGCTAGGCTTTGGTGGAGCTACAAACTCAGAGATCCCAACTTTTGAGATGGAGTATGGGCA CTGGTTGGAGGGGCAAAATAGACATATTTGTGACATGAGAATAGCTTTAAATGCTCATATCAGTGACGCAGAGCTCCACATACTTGTAGAAAGAGGCATG AGCCACTATTCTGAACTTTTTCGCATGAAAGCAACTGCAGCTAAAGCTGACGTTTTTTATGTGATGTCTGGCTTGTGGAAATCATCGGCGGAAAGGTTTT TATTGTGGATTGGAGGGTTTCGCCCTTCAGAACTTCTTAAGATTCTCTTGCCTCACATTGAGCCCTTGTCAGAACAGCAAGTTGTGAATGCTCTTAATCT TAGACAATCATGCCAGCAAGCTGAAGATGCTCTTTCACAAGGAATGGAGAAACTCCAGCAAACTCTAGCAGAGACTGTGGCAGCTGGTCAATTGGGTGAA GCCAGTTACTCGCCTCACAAGGAAACTGCAACGGAGAAGCGAAATGATCTGGTCCGCTTTGTGCAGCAGGCGGACCATCTACGCCAGGAGACTTTGCAGC AGATGTCTCGGATCTTAACAACACACCAGGCAGCTCGAGGCCTTCTTGCTTTAGGAGAATACTTCCAACGGCTTAGGGATCTGAGTTCACTTTGGGCAAT TCGCCCTTGCGAGCCTGCCTAG
AA sequence Show only first row Show all	>Potri.005G082000.7 pacid=42805074 polypeptide=Potri.005G082000.7.p locus=Potri.005G082000 ID=Potri.005G082000.7.v4.1 annot-version=v4.1 MNSTSTQFVTSGRMGIYDPMHQIGMWGENFKSNRNTSTSTMFIAGNPNPSASIIIAPDTKLDNQSEDTSQGTLGPSNKYDQEASKPSDKVQRRLAQNREA ARKSRLRKKAYVQQLESSRTKLLQLEQELDRARQQGLYIGGGVDTSQLGFGGATNSEIPTFEMEYGHWLEGQNRHICDMRIALNAHISDAELHILVERGM SHYSELFRMKATAAKADVFYVMSGLWKSSAERFLLWIGGFRPSELLKILLPHIEPLSEQQVVNALNLRQSCQQAEDALSQGMEKLQQTLAETVAAGQLGE ASYSPHKETATEKRNDLVRFVQQADHLRQETLQQMSRILTTHQAARGLLALGEYFQRLRDLSSLWAIRPCEPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	0	1	STGA1.3
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	1.00	0.8762
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	2.44	0.8122
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	3.16	0.8371
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	3.46	0.8333
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	4.47	0.8319
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	5.00	0.8133
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	6.63	0.7627	Pt-CAT3.3,PtrCAT3
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	6.92	0.7866	WRKY39.1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	8.00	0.7835
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	8.36	0.7905

Compare expression of checked genes

Potri.005G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.