Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39660 219 / 1e-69 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 204 / 1e-63 PYD4 PYRIMIDINE 4 (.1) AT2G38400 179 / 8e-54 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT1G80600 82 / 3e-18 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 74 / 3e-15 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G22200 66 / 1e-12 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 54 / 3e-08 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 50 / 4e-07 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085600 [exp] 244 / 4e-79 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 194 / 1e-59 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 193 / 2e-59 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.007G080000 [exp] 100 / 1e-26 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 79 / 6e-17 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 77 / 4e-16 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.005G095800 [exp] 75 / 2e-15 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.016G018500 [exp] 73 / 5e-15 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 71 / 3e-14 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004480 [exp] 230 / 1e-73 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 228 / 9e-73 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10025262 [exp] 179 / 1e-53 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10009086 [exp] 176 / 5e-53 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10008025 [exp] 81 / 1e-17 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 77 / 3e-16 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 77 / 3e-16 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031196 [exp] 73 / 9e-15 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10010465 [exp] 70 / 9e-14 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 70 / 1e-13 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.005G082100.3 pacid=42803009 polypeptide=Potri.005G082100.3.p locus=Potri.005G082100 ID=Potri.005G082100.3.v4.1 annot-version=v4.1 ATGCAATATTTGTTTGATGAAAATGGAAGGAGGTATTTGAATGCTTTTTCTGGGATAGTGTCTGTCTCTTGCGGCCACTGCCATCCTCAAATTTTAAATG CAATTACGGAGCAAAGCAAGCTGCTCCAACATGCTACTACCATTTACTTGAACCACACTATTGCTGATTTTGCTGAGGCCTTAGCTGCTAAGATGCCTGG AAATCTCAAGGGCGAAATTCATCATGTTATTAATCCAAATCCACACAACAATTATGGTACTTCTGGAAAAGTTGCTGGTTTCATATCCGAAACTATTCAG GGAGTTGGAGGAGCAGTTGAATTAGCCCCTGGATACTTGACAATGGTTTATGACATTGTGCGTAAGGCAGGGGGAGTTTGCATAGCTGACGAAGTGCAAT CGGGGTTTGGCCGCACAGGAAGCTGCTATTGGGGTTTTGAGACTCAAGGTGTCATCCCTGACATTGTTACCATGGCAAAGGGTATTGACAATGGTTTGCC ATTGGGAGCTGTAGTAACAACACCAGAAATAGCACAAGTCATGGCACAGAAAATTCAATTCAATACTTTTGGTGGAAACCCTGTGTTTTCTGCCAGTGGA CATGAAGTACTGAGAGTCATTGACCAAGAGAGGCGTCAAGAATAG
AA sequence Show only first row Show all	>Potri.005G082100.3 pacid=42803009 polypeptide=Potri.005G082100.3.p locus=Potri.005G082100 ID=Potri.005G082100.3.v4.1 annot-version=v4.1 MQYLFDENGRRYLNAFSGIVSVSCGHCHPQILNAITEQSKLLQHATTIYLNHTIADFAEALAAKMPGNLKGEIHHVINPNPHNNYGTSGKVAGFISETIQ GVGGAVELAPGYLTMVYDIVRKAGGVCIADEVQSGFGRTGSCYWGFETQGVIPDIVTMAKGIDNGLPLGAVVTTPEIAQVMAQKIQFNTFGGNPVFSASG HEVLRVIDQERRQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.005G082100 [exp]	0	1
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	2.44	0.7365
					Potri.017G022262 [exp]	9.32	0.7600
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138802 [exp]	12.24	0.7173
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	13.07	0.6808
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	15.09	0.7244	WNK8.2
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	20.85	0.6650
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Potri.011G044600 [exp]	23.64	0.6884
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036700 [exp]	25.78	0.7218
AT1G61260			Protein of unknown function (D...		Potri.011G044000 [exp]	36.66	0.6671
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G061100 [exp]	40.98	0.6463

Compare expression of checked genes

Potri.005G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.