Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL26.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49910 214 / 1e-72 Translation protein SH3-like family protein (.1) AT5G67510 209 / 1e-70 Translation protein SH3-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085200 [exp] 233 / 3e-80 AT3G49910 241 / 3e-83 Translation protein SH3-like family protein (.1) Potri.007G055900 [exp] 230 / 5e-79 AT3G49910 236 / 2e-81 Translation protein SH3-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028537 [exp] 208 / 2e-70 AT3G49910 262 / 1e-91 Translation protein SH3-like family protein (.1) Lus10018139 [exp] 208 / 2e-70 AT3G49910 262 / 1e-91 Translation protein SH3-like family protein (.1) Lus10019283 [exp] 176 / 6e-58 AT3G49910 212 / 1e-72 Translation protein SH3-like family protein (.1) Lus10011540 [exp] 140 / 5e-44 AT3G49910 178 / 3e-59 Translation protein SH3-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF00467 [poplar] [flax] KOW KOW motif CL0107 [poplar] [flax] PF16906 [poplar] [flax] Ribosomal_L26 Ribosomal proteins L26 eukaryotic, L24P archaeal
Representative CDS sequence Show only first row Show all	>Potri.005G082600.1 pacid=42803977 polypeptide=Potri.005G082600.1.p locus=Potri.005G082600 ID=Potri.005G082600.1.v4.1 annot-version=v4.1 ATGAAGTATAACCCAAGGGTCTCCTCCTCCAGACGCAAGAGCCGGAAGGCCCACTTCTCGGCGCCCTCCTCCTTGCGCAGGATCCTAATGAGCGCTCCTC TCTCCACCGACCTCCGCCAGAAGTACAACGTCCGATCCATGCCTGTCCGTAAGGACGATGAAGTCCAGGTTGTTCGTGGGACCTACAAAGGACGCGAGGG CAAGGTGGTTCAGGTTTATCGTCGAAAGTGGGTCATCCACATCGAGAGGATTACACGTGAGAAGGTGAATGGGTCAACAGTTAATGTCGGTATCAACGCG TCCAAGGTTGTTATCACGAAGTTGAGGCTTGATAAGGATAGGAAGTCTCTATTGGATCGCAAGGCAAAGGGACGTGCTGTTGGAGACAAAGAGAAGGGCA CTAAGTTCACTGCCGAGGACATCATGCAGAGTGTGGACTGA
AA sequence Show only first row Show all	>Potri.005G082600.1 pacid=42803977 polypeptide=Potri.005G082600.1.p locus=Potri.005G082600 ID=Potri.005G082600.1.v4.1 annot-version=v4.1 MKYNPRVSSSRRKSRKAHFSAPSSLRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINA SKVVITKLRLDKDRKSLLDRKAKGRAVGDKEKGTKFTAEDIMQSVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49910			Translation protein SH3-like f...		Potri.005G082600 [exp]	0	1	Pt-RPL26.1
AT5G59850			Ribosomal protein S8 family pr...		Potri.008G051900 [exp]	2.23	0.9143	WRP15.3
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	4.24	0.8991
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	10.77	0.8944	Pt-RPL18.12
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.014G127800 [exp]	14.00	0.8241	Pt-U1A.2
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.009G132000 [exp]	14.28	0.8082
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.012G114000 [exp]	17.57	0.8966
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	17.83	0.8839
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013101 [exp]	19.79	0.8628
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.001G131000 [exp]	20.12	0.8791	ATBBC1.2
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	22.44	0.8834	RPL35.2

Compare expression of checked genes

Potri.005G082600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.