Plant FIBer expression Database

Potri.005G082800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39640 786 / 0 GGT1 gamma-glutamyl transpeptidase 1 (.1.2)
AT4G39650 761 / 0 GGT2 gamma-glutamyl transpeptidase 2 (.1)
AT4G29210 573 / 0 GGT4, GGT3 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
AT1G69820 293 / 2e-96 GGT4, GGT3 gamma-glutamyl transpeptidase 4, gamma-glutamyl transpeptidase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G333400
[exp]
884 / 0 AT4G39640 768 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2)
Potri.018G069450
[exp]
605 / 0 AT4G29210 789 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035003
[exp]
607 / 0 AT4G29210 754 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Lus10012925
[exp]
511 / 8e-177 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0052 NTN PF01019 G_glu_transpept Gamma-glutamyltranspeptidase
Representative CDS sequence
>Potri.005G082800.1 pacid=42804521 polypeptide=Potri.005G082800.1.p locus=Potri.005G082800 ID=Potri.005G082800.1.v4.1 annot-version=v4.1
ATGGACCAACACCACCCCACCATCACATGCAGATTCAATGCTTTCAATGGCAGAAGAATACATTGTGCTATGCGAGACTTGTCATCTTTGCCGTCGTTAT
GGGCAATCCTTCTGTTTTTCTTGTTTCTACTGTGCCCTGCTACTTCAAGCCTTCACGGTCGTCAGAGTGGTTCAACCAAATTTAGACACCAAGAAGTAGT
GGCACGCCATGGTGCTGTTGCTACTGATGATGGTAGATGTTCCAGAATTGGGATTGATGTTCTTCGTGAAGGAGGACATGCTGTTGATGCAGCTGTAGCT
GCTTCACTTTGTTTGGGAGTTGTGAGCCCAGCATCAAGTGGCATCGGTGGAGGAGCCTTTATGCTTATCAGACTTGCCAGCGGGGAGGTACATGCCTATG
ACATGAGAGAAACTGCGCCAATGCAAGCTTCTGAGAATATGTATGATGGAAATGATACTCTAAAAGCAAGAGGCGCCCTATCCATAGCTGTCCCAGGGGA
ACTTGCTGGCCTTTACAAAGCGTGGAAACAGCATGGAAGGCTCCCATGGGAAAGGCTTGTAAGGCCAGCTGAGAAGCTAGCTCGCAGAGGATTCAAGATT
TCACGATACCTCCGCATGCAGATGGAAAAGACACAATCAGGTATCTTGGCAGATGAAGGGCTTCGCAACGTATTTACATCAAATGGTGATCTCTTGCAAC
AAGGTGATATCTGTTACAACAAGAAACTAGCAGACACGTTAAGAAAAATTTCAAAAGGAGTGGAGGCCTTTTATAATGGACCAATAGGTTTCAATTTGGT
AAGAGATATTCAGAAACTTGGGGGGATACTGACAATAGAAGACTTGCAGAGGTATAAAGTCAGAGTTAGAGAACCCATCATCACTAACATCCTAGGCTAC
AAAATAATTGGAATGCCTCCCCCTTCTTCAGGGGGTGCTTCAATGATGCTTATTCTGAACATTCTTGCCCAATACGGAGTGCCGGAAGGCATTTCTGGTC
CCCTTGGGTTCCATCGACTAGTTGAATCTTTAAAGCATGCGTTCGCTGTGAGGATGAAGCTTGGCGATCCTGACTTTGCTGATGTTGCTCAAGTCGTATC
AGATATGATCTCTCCAAAATTTGCAGAAGAGTTGAAGAAAACCATTTATGACAACATGACTTTTGATCCTGGTCATTATGGTGGCAGGTGGAACCAGATT
AATGATCATGGCACGAGTCATATATCCATTGTAGATAGTGAGCGGAATGCTGTCTCCATGACCAATACTGTGAATTCATACTTTGGGACACAGATACTAT
CTCCAAGTACAGGAATAGTTCTGAATAATGAAATGGATGATTTCTCCATGCCTGGGAATAATACTGGGCATGTTCCGCCACCTGCACCTCTTAATCTCAT
CAGGCCTGGGAAGAGACCATTATCATCCATGACACCTACTATTGTGCTGAAGGACGAGCAACTGAAAGGTGTGGTAGGCGCAAGTGGGGGATCCATGATC
ATTGCTGGGACTACGGAGGTTCTCTTAAATCATTTTGCGAAGGGAATGGATCCACTCTCTTCTGTCTTGGCTCCAAGAGTCTATCATCAGCTAACTCCCA
ACGTAGTACAGTATGAGAATTGGACAACAGTGTACGGCGACCACTTCGAACTCTCTGCGGATGTCAGGGCATTCCTCCAGAAAAGAGGCCATGTCCTGAA
AGGCATTGCTGGTGGAACCATTTGCCAATTTATTGTTCAGGATTTAGAGACTACAGAAGGAAATAAACTCATGGGAAAGCTAGTAGCAGTTAGCGATCCA
AGGAAAGGAGGGTTGCCTGCTGGTTATTAA
AA sequence
>Potri.005G082800.1 pacid=42804521 polypeptide=Potri.005G082800.1.p locus=Potri.005G082800 ID=Potri.005G082800.1.v4.1 annot-version=v4.1
MDQHHPTITCRFNAFNGRRIHCAMRDLSSLPSLWAILLFFLFLLCPATSSLHGRQSGSTKFRHQEVVARHGAVATDDGRCSRIGIDVLREGGHAVDAAVA
ASLCLGVVSPASSGIGGGAFMLIRLASGEVHAYDMRETAPMQASENMYDGNDTLKARGALSIAVPGELAGLYKAWKQHGRLPWERLVRPAEKLARRGFKI
SRYLRMQMEKTQSGILADEGLRNVFTSNGDLLQQGDICYNKKLADTLRKISKGVEAFYNGPIGFNLVRDIQKLGGILTIEDLQRYKVRVREPIITNILGY
KIIGMPPPSSGGASMMLILNILAQYGVPEGISGPLGFHRLVESLKHAFAVRMKLGDPDFADVAQVVSDMISPKFAEELKKTIYDNMTFDPGHYGGRWNQI
NDHGTSHISIVDSERNAVSMTNTVNSYFGTQILSPSTGIVLNNEMDDFSMPGNNTGHVPPPAPLNLIRPGKRPLSSMTPTIVLKDEQLKGVVGASGGSMI
IAGTTEVLLNHFAKGMDPLSSVLAPRVYHQLTPNVVQYENWTTVYGDHFELSADVRAFLQKRGHVLKGIAGGTICQFIVQDLETTEGNKLMGKLVAVSDP
RKGGLPAGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39640 GGT1 gamma-glutamyl transpeptidase ... Potri.005G082800
[exp]
0 1
AT3G51895 AST12, ATST1, S... sulfate transporter 3;1 (.1) Potri.005G213500
[exp]
1.00 0.8527 Pt-SULTR3.5
AT5G47070 Protein kinase superfamily pro... Potri.003G085300
[exp]
5.74 0.8445
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.008G024100
[exp]
6.00 0.8460
AT3G60810 unknown protein Potri.002G148400
[exp]
8.12 0.8192
AT2G34930 disease resistance family prot... Potri.010G107000
[exp]
9.89 0.8125
AT5G24530 DMR6 DOWNY MILDEW RESISTANT 6, 2-ox... Potri.012G006300
[exp]
16.97 0.8096
AT1G75280 NmrA-like negative transcripti... Potri.007G123700
[exp]
21.07 0.8215 PCBERp2
AT5G15240 Transmembrane amino acid trans... Potri.017G083500
[exp]
22.44 0.7710
AT5G66850 MAPKKK5 mitogen-activated protein kina... Potri.007G039800
[exp]
23.23 0.7533
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G103100
[exp]
31.46 0.7421

Potri.005G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.