Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 705 / 0 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G11950 621 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 618 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 561 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 373 / 1e-111 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 253 / 1e-69 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 1242 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 634 / 0 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 612 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 413 / 6e-126 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 391 / 5e-113 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G027000 [exp] 352 / 3e-106 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 270 / 8e-75 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 241 / 2e-65 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015260 [exp] 809 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 617 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 613 / 0 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10027890 [exp] 604 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 574 / 0 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 422 / 6e-130 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 419 / 2e-128 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10004602 [exp] 377 / 3e-119 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002052 [exp] 224 / 3e-67 AT1G62310 199 / 5e-60 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10020084 [exp] 233 / 1e-62 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.005G082901.1 pacid=42803240 polypeptide=Potri.005G082901.1.p locus=Potri.005G082901 ID=Potri.005G082901.1.v4.1 annot-version=v4.1 ATGACAAGAGTCGGGAAGCGGCAGAGACCGGCGAAATCGACGGCGGGGGTGAAGGAGGAAGCTGCGGAGAATGGTGGGTCTGAGGAGGAAGTGAAGGAAA GTGGGGGTTTAGTTGAAGGTAGTGAAATTGAAGGGAAAGTGGAGGAAACTTGTCATTTCGATAAGTCAAAGGATGTCTCAAATAAGGGGAATAGGGAGTG GAAGGTAAAGGAGAGTGAGAGTAGAGTTAGTGAAGAAGAAAGGGAAGGTAATGGTGTGGAGGAAGGGCGAGAATGTGATCTGAAGGAGAATGCGAATAAG GGTAAAAAGAAAAAGAAGGGAAAGAAGAAAGAAAGTGATAATGAGAAGGAGAAGGAGAAGGTGAAAGAAGGGAATGATGAAAAGGGGGTCTCATCTGTTG TGAAAGAGAAGAAAAGGGTGAAATTTGCTGAGAAAGAGGTGGCGAGTGTGGAAGAAGGCGAATTTGGTGATAAAAGTGAAGTGCGGTTTGTGAAGCAGGA AGAGAGAGGGTTTGCTTGGAAGGAAAAACAGGAGGCTGGTACTGAGGAAGAAGAAGAGATAGCCGTAGATAATGGAAAAGAAGGTAAATTAGATGGGAAA AGGGAAGAGAAAGGGAAAAGGAAGAGGGAGAAGAAGGGAGGTAAATTGAGGAATCAGGAGGTGGATGATGAGGAAGGGAAAGAGATTGGAGAGCTGGGAG TTGAAGGGAAGGAAAAAGTGAAATTTGTTGAGAATGAAGGAGAGAACAGTGAAAAGGGTGAGAAGAAGGGAGCTGAATTAGGTAATGAGGAGGAGACTGT TGTCGGCGTGGAAGAGAATGGAGGTCCATTAAAGAAGAGGCCGAGGAAAAATGAGAAAAAGGTGAATTATGCTGAGATTGATAGTGCATTAGATGAGGTA GTGTTTGGGGAGAAACATAGGAAGAGCCAGAAGGAGGATGGAGTCTCGGATAGTAGAAAGAAGAAAGCACTCTTGGAGAATGATGGGCTGCAACGTGAGA AAAAGAGTGAAAATGGTGATGTAAACAACGAGGAGAAGGGAACTGCATTGGGTAATGAGGAGGTGGAGAGTGAGGAGGGGAAGGAGACTGTTGTTGGTGT GGAAGAGAATGGAGGTCCCTTAAAGAAGAGGCTGAGGAAAACTGAGAAAAAGGTGAATTATGCTGAGATTGATAATGCATTAGACGAGTTAGTGTTTGGG GAGAAGCATAGGAAGAGCAGGAAGAAGGTGGGAGTCTCGGAGAGTAGACAGAAGAAAGGGGTCTCGGAGTGTGATGGATTGGAAAGTGAGAAAAAGAGGG AAAACGGTGATGTGAATAGTGGGACAAAGAGAGCGAGTCAAAAAGGGAAGAAGAAGCAGGAGGCGCAGGAGAAAATTAAAGGAGAAGAAGAAATGGAAGA AAGTGGTGAAGGCAAAGGTGAAGGAGATTCTTTGGTGATTTGCACTGGGACAGGTCATGGGCCCAGGAGTCAGAAAGAGCAAGCTGGGCAGAACAGCAAA TCCTGGCGCACTAGTCAGTTCACTGAGGAAGCGTGTTTAATGTGCCACCAATGCCAGAGAAGTGATAAAGGCCGTGTCATTCGATGCCTGAAATGTAAAA GGAAGCGCTATTGTATCCCCTGCTTAACAAAATGGTATCCTAAGATGACAGAGGATGATATTGCAAGTGCTTGTCCAGTTTGTCTTGGAAATTGCAACTG TAAATCTTGTTTGCGTCTAGATGCGCCAGTAAAAGACCTGAAAAATTTAAACCTGGAAGTAAGCGAAGAAGAAGAAGTGCAGCACTCTAAGTTTTTACTT TGTTCACTTCTTCCATTTCTGAAGCGGTTAGATGCAGAGCAAATGACGGAGAGAGAAATTGAGGCTAGGATAAGGGGTGTACCGCCTGCAGACTTACAGA TAGAAAATGCTAGCTGCCCTGCAGATGAACGCATGTTCTGTGATAATTGCCGAACTTCTATTTTTGATTATCACAGAAGTTGCTCAAATTGCTCTTCTGA TCTTTGTCTTCTCTGTTGCCGTGAGATCCGTGCTGGATGCTTGCAAGGTGGTGGGCCGGATGTGGTTATGGAGTATATTGATAGGGGATTTAAGTATATG CATGGTGAACATGAGGAAATAAAAGATGAATTGCTGACTGGTTCGCCTAAAAAGACTGTCTCTGAGGATTTTATAGGGCCAAAGTCTGGATGGAAAGCAA ATGAAGATGGAAGCATTCATTGTGCTTGTGGTAGTGGCAATTTACAACTGAAATGTTTGTTCCCAAACACAGAAGTTAATTTTTCAGTTTCAGTTTCAGT TTCAGAGTTGGTAAAGAAAGTTGAAGATGTGTTAAAAAACTGTGAAATTGACTCTGCTAATGCTCCCGTTGAACTACGCATGTGTTTTAATTCGAATGGC AATCGTGATATCTGTAATGGTAACGAGTTGTTAAAAGCAGCATGTCGAGAAGATTCTGATGATAACTATTTGTTCAATCCAAAAGCCAAAGATATCATGG AGGATGATTTGAAACATTTTCAGTTCCATTGGAAGAGAGCTGAGCCTGTGATTGTTAGCAATGTGCTTGAGACTGCTTCTGGGTTAAGTTGGGAGCCGAT GGTAATGTGGCGTGCCTTCCGCCAGATCAAACATGAAAAACATGGTACACTTTTGGATGTTAAGGCAATTGAGTGCCTGAGTTGCTGTGAGGTAGAAATT AATGTCCATAAATTCTTTACTGGTTACACGGAGGGAAGGTTTGATGGTAAAAATTGGCCTCAGATTCTGAAGCTGAAAGACTGGCCCCCATATAAAACAT TTGGTGAAAGTTTGCCACGACATGATGTTGAATTCACCTGTTGTTTGCCCTTCAAGGAGTATACTGACCGCCGCAGTGGACCTTTAAACCTTGCTATCAG GTTGCCTCAGAATTCTTTGAAGCCAGACATGGGGCCGAAGACATATATTGCTTATGGATTTCCTATAGAGCTTGGGCGTGGAGATTCTGTTACCAAGCTT CATTGTGACATGTCTGATGCGGTGAATGTTTTAACGCATACTGCTGAGGTATCCTATAACGATGGACAACTTGCTGAGATTCAAAATTTGAAGCTTCTTC ACTTCAAACAAGACCAGAGAGAACTTTTTGGATATGATCAGAATGTGGATAAATTTGATGTTAACAAGAATGGTGGTGTTTCTGGGAAATCTACTGAGAA GGAAGAAGTGGTTCAAGGCAAAATCTATGAGAGTGGACCTTTAAATTGTGCAAATGAGTTGGAATGGCCTGACGCTTTAGATGGAGGTGCTGTTTGGGAT ATTTTCCGGAGAGAAGATGTTCCTAAATTGCAGGAATATCTCGATAAGCACTTCAAAGAATTTAGGCATATCCATTGTTGCCCTTTACAAAAGGTTGTTC ACTCCATACATGACCAGACATTTTATTTGACTCTAGAGCACAAAAGGAAGCTAAAAGAGGAATATGGCATTGAACCGTGGACATTTGTCCAGAAACTTGG AGATGCTGTCTTTATTCCTGCAGGCTGTCCTCATCAAGTTAGAAACTTGAAGTCTTGCATTAAGGTAGCACTGGACTTTGTCTCGCCTGAAAATGTTGGT GAGTGCATACGTTTGACAGAGGAATTCCGTCTGCTCCCCCCAAATCATCAGGCCAAGGAAGACAAGCTGGAGATAAAGAAAATGTTACTTCATGCTGCGA GACGCGCTGTAGATTTTCTGATGAAGGATGGAAAAGTGGAGAAAACCGAGAAGGTTTGA
AA sequence Show only first row Show all	>Potri.005G082901.1 pacid=42803240 polypeptide=Potri.005G082901.1.p locus=Potri.005G082901 ID=Potri.005G082901.1.v4.1 annot-version=v4.1 MTRVGKRQRPAKSTAGVKEEAAENGGSEEEVKESGGLVEGSEIEGKVEETCHFDKSKDVSNKGNREWKVKESESRVSEEEREGNGVEEGRECDLKENANK GKKKKKGKKKESDNEKEKEKVKEGNDEKGVSSVVKEKKRVKFAEKEVASVEEGEFGDKSEVRFVKQEERGFAWKEKQEAGTEEEEEIAVDNGKEGKLDGK REEKGKRKREKKGGKLRNQEVDDEEGKEIGELGVEGKEKVKFVENEGENSEKGEKKGAELGNEEETVVGVEENGGPLKKRPRKNEKKVNYAEIDSALDEV VFGEKHRKSQKEDGVSDSRKKKALLENDGLQREKKSENGDVNNEEKGTALGNEEVESEEGKETVVGVEENGGPLKKRLRKTEKKVNYAEIDNALDELVFG EKHRKSRKKVGVSESRQKKGVSECDGLESEKKRENGDVNSGTKRASQKGKKKQEAQEKIKGEEEMEESGEGKGEGDSLVICTGTGHGPRSQKEQAGQNSK SWRTSQFTEEACLMCHQCQRSDKGRVIRCLKCKRKRYCIPCLTKWYPKMTEDDIASACPVCLGNCNCKSCLRLDAPVKDLKNLNLEVSEEEEVQHSKFLL CSLLPFLKRLDAEQMTEREIEARIRGVPPADLQIENASCPADERMFCDNCRTSIFDYHRSCSNCSSDLCLLCCREIRAGCLQGGGPDVVMEYIDRGFKYM HGEHEEIKDELLTGSPKKTVSEDFIGPKSGWKANEDGSIHCACGSGNLQLKCLFPNTEVNFSVSVSVSELVKKVEDVLKNCEIDSANAPVELRMCFNSNG NRDICNGNELLKAACREDSDDNYLFNPKAKDIMEDDLKHFQFHWKRAEPVIVSNVLETASGLSWEPMVMWRAFRQIKHEKHGTLLDVKAIECLSCCEVEI NVHKFFTGYTEGRFDGKNWPQILKLKDWPPYKTFGESLPRHDVEFTCCLPFKEYTDRRSGPLNLAIRLPQNSLKPDMGPKTYIAYGFPIELGRGDSVTKL HCDMSDAVNVLTHTAEVSYNDGQLAEIQNLKLLHFKQDQRELFGYDQNVDKFDVNKNGGVSGKSTEKEEVVQGKIYESGPLNCANELEWPDALDGGAVWD IFRREDVPKLQEYLDKHFKEFRHIHCCPLQKVVHSIHDQTFYLTLEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVG ECIRLTEEFRLLPPNHQAKEDKLEIKKMLLHAARRAVDFLMKDGKVEKTEKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	0	1
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	1.41	0.9282
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	2.00	0.9114
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	4.00	0.8844
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	8.36	0.8553
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	8.48	0.8132
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	9.00	0.8911
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	10.00	0.8256
AT3G54630			unknown protein		Potri.001G208700 [exp]	12.00	0.7757
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	12.40	0.8040
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	12.96	0.8363

Compare expression of checked genes

Potri.005G082901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.