Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10020 1140 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G27060 328 / 2e-96 Leucine-rich repeat protein kinase family protein (.1) AT4G20940 286 / 2e-81 Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 184 / 2e-47 ERL1 ERECTA-like 1 (.1.2) AT3G56370 184 / 2e-47 Leucine-rich repeat protein kinase family protein (.1) AT3G28040 181 / 3e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 180 / 3e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 179 / 5e-46 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT4G20140 176 / 1e-44 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20270 174 / 2e-44 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082800 [exp] 1578 / 0 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G197500 [exp] 665 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G163700 [exp] 359 / 4e-107 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G465800 [exp] 355 / 2e-105 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G159101 [exp] 201 / 5e-59 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 195 / 7e-51 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 192 / 2e-50 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.004G049100 [exp] 191 / 2e-49 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.013G091000 [exp] 188 / 7e-49 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038544 [exp] 369 / 1e-110 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 357 / 3e-107 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10026756 [exp] 344 / 5e-102 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025541 [exp] 343 / 9e-102 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012225 [exp] 189 / 1e-50 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012877 [exp] 188 / 1e-48 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014235 [exp] 183 / 1e-47 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 182 / 2e-47 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10030526 [exp] 184 / 3e-47 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014236 [exp] 179 / 4e-46 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G083000.1 pacid=42802799 polypeptide=Potri.005G083000.1.p locus=Potri.005G083000 ID=Potri.005G083000.1.v4.1 annot-version=v4.1 ATGACTCTTTTCACTTTCCTTTTCACTCTCTCTCTACTCTTTTTCTTCACTTCCGGCTCCGACCTCCGATCCTTACTCGAATTCAAAAAAGGTATCCAAT CCGACCCGCTCCATATGATCTCTAAATGGGACCCCTCTGCTTTACCCGACCCTAATTCTTGCCCCCATTCCTGGCCCGGTATCTCCTGCGACCCCAATTC CGATTCCGTCATTTCTATTACCCTAGACCGCCTTGGTCTCGCCGGTGACTTGAAGTTCTCCACCTTACTAAGCCTCAACTCCCTGCAGAGTATTTCACTT TCGGGTAATCAGTTTACGGGTCGCCTTGTACCCGCATTGGGATCAATGAGCTCATTACAGTACTTGGATCTGTCTAATAACAACTTTTCAGGTCCGATCC CGGGTCGGATCGCGGAGTTATGGAATTTGAAGTATTTGAACTTGTCAACGAATGGTTTCGAAGGCGGGTTTCCCGTCGGTTTACCAGTTGGGTTTAGGAA TTTGCAGCAATTGAGGGTTTTGGATTTGAGTTCTAATAGGTTTTGGGGTGATATTAGTGCGGTCTTAAGTGAATTGATTCATTTAGAAAAAGTGGATTTG AGTGATAATGAGTTTTCTGGCGGGTTTAGTGACATAAGTGGAGAGAATGTGTCAGGTTTGGCCAATACATTGCATCTTTTGAATTTGAGAAAGAATAAAT TTAATGGTGGGTTTTTGAAAGCAGACGTAATTGGGCTGTTTAGGAATTTGGAGGTTTTGGATTTGGGGAATAATGAGATTAATGGAGAATTGCCTTCATT TGGGTCTTTGACGAATTTGAAGGTTTTGAGGTTGGGGAATAATCAGCTTTATGGAGGTATACCCGAGGAATTGTTGAACGGGTCGATACCGATTGAAGAA CTGGATCTTAGTGGCAATGGATTTACAGGTTATATTAATGAAATTCACTCCACAACTTTGAATGTTTTGAATGTTTCTTCAAATGGTTTAAAAGGTCACT TGCCCACTTTTCTTCAAAGATGTTCAGTTCTGGATTTGAGTGGAAATATGATCACTGGTGACATGTCTGTTATGCAAAATTGGGGAGCCACTTTGGAGGT TCTTGATTTGAGTTCAAACCAGTTATCCAGAAGCTTGCCAAACTTGACTCCTCAGTTTGTGAGGTTAACTAAACTTAATCTTAGGAATAATTCCCTAAAA GGCAATTTGCCTCCTCAGTTGTGGGACATTTCCACATTGTCTTCAGTTGACCTCAGCTTAAATCAACTCAATGGGCCTATTCCGGGTAGTTTCTTTACTT CACTGACCTTGACGAACCTGAATCTTTCTGGAAATCAGTTTTCAGGGCCAATTCCAGTTCAAGGGTCAGGTGCAGGCGAATTATTAGTTCTACCTTCTTA TCCATTGATGGAGTCTCTTGATGTCTCTCAAAATTCATTATCTGGTCCATTGCCTTCTGGCATAGGCAACTTTGCCAATCTCAAATCACTGAATCTTTCA CATAATAACTTAACAGGACAGCTGCCAATTGAACTCAGCAAGCTAACCTACTTGCAGTACCTTGATTTATCTGCCAACAATTTTCAGGGTAAAATCCCTG ACAAGCTTCCATCCAGTCTGATTGGATTGAACATGTCCTATAATGATCTCTCTGGAAATATTCCACAAAATTTGAGAAATAAATTTGATATTACTTCATT TCTTCCTGGGAATCCCTCATTAATCATCCCAAAGGCCGGTGGACCATCAACAAATTCTGTGCCACATCACATTTCTGGAGGAGGGAAACACGGGTCAAAG CGTAATATTACAATTGCAATAATTGTTGCTACAGTCGGGGCTGCTGCAATGGTTGCTTTTGTTTTATTGGCCTATCAGCGGGCACAGCGGAAAGAATTTC ATGGGAGAAGTGATTTTAGTGGTCAAACAGCAATGGAGGATGCTAAGCTAGGAAGATCTTCCCGAATTTCCCTTTTCAAATTCCAATTGAATGCTCACCG CCCTCCAACTTCATTGAGTTTTTCGAACAATCACTTGCTTACTGCAAATTCAAGGTCATTATCAGGGCAGACAGAATCTGCAACTGAAATTGTTGAGCAT AGTTTGTATGAAGGAATGATGGCGAGTTCATCAATTCCTAATTTGCTAGATGACCATCCCACAACATCAGGAAGGAAGTCCTCCCCAGGTTCCCCATTAT CTTCCTCACCTCGTTTTGTTGAACCTGCAAAATTGGATGTCTATTCACCAGACAGGTTGGCTGGGGAACTGTCGTTCCTTGATAGTTCACTTGCATTTAC AGCAGAAGAGTTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGCAGCCATGGAACTTTATATAAGGCTACTCTAGACAGTGGACATATGCTGACTGTG AAGTGGTTGCGGGTTGGACTAGTCAAACATAAGAAAGAATTTGCTAAGGAAGTTAAAAAGATTGGCTCTATACGACACCCAAATATTGTTCCACTGCGGG CATATTATTGGGGGCCTAGAGAGCAAGAAAGACTTCTTTTAGCTGACTATATCCAGGGTGATAGCTTGGCCCTACATCTATATGAAACAACACCTCGGAG GTACTCCCTGTTGTCATTCAGCCAAAGACTAAAAGTTGCTGTTGATGTTGCTCGGTGTCTATTGTATCTTCATGATAGAGGCATGCTCCATGGAAATCTA AAGCCAGCAAATATACTTCTGGAAGGTCCTGATTACAATACTCGTCTTACTGATTATGGACTACACCGTTTGATGACACCTGCTGGCATTGCAGAGCAGA TACTAAATCTTGGAGCACTAGGATATCGAGCTCCAGAGCTTGATAATGCATCTAAACCTGCGCCTTCATTCAAGGCTGACGTGTATGCATTTGGAGTGAT CCTGATGGAATTGTTAACCAGAAGAAGTGCTGGTGACATAATATCAGGTCAGTCAGGAGCTGTTGACCTTACAGATTGGGTTCAGTTGTGCGATCAAGAA GGAAGACGAATGGACTGCATTGACAGGGATATTGCAGGTGGGGAAGAACCAACGAAGGCAATGGATGATTTGCTTGCCATATCGCTTAAGTGTATTCTTC CTGTAAATGAGAGGCCTAACATCAGACAAGTCTTTGATGATCTATGTTCTATATCTGTTTGA
AA sequence Show only first row Show all	>Potri.005G083000.1 pacid=42802799 polypeptide=Potri.005G083000.1.p locus=Potri.005G083000 ID=Potri.005G083000.1.v4.1 annot-version=v4.1 MTLFTFLFTLSLLFFFTSGSDLRSLLEFKKGIQSDPLHMISKWDPSALPDPNSCPHSWPGISCDPNSDSVISITLDRLGLAGDLKFSTLLSLNSLQSISL SGNQFTGRLVPALGSMSSLQYLDLSNNNFSGPIPGRIAELWNLKYLNLSTNGFEGGFPVGLPVGFRNLQQLRVLDLSSNRFWGDISAVLSELIHLEKVDL SDNEFSGGFSDISGENVSGLANTLHLLNLRKNKFNGGFLKADVIGLFRNLEVLDLGNNEINGELPSFGSLTNLKVLRLGNNQLYGGIPEELLNGSIPIEE LDLSGNGFTGYINEIHSTTLNVLNVSSNGLKGHLPTFLQRCSVLDLSGNMITGDMSVMQNWGATLEVLDLSSNQLSRSLPNLTPQFVRLTKLNLRNNSLK GNLPPQLWDISTLSSVDLSLNQLNGPIPGSFFTSLTLTNLNLSGNQFSGPIPVQGSGAGELLVLPSYPLMESLDVSQNSLSGPLPSGIGNFANLKSLNLS HNNLTGQLPIELSKLTYLQYLDLSANNFQGKIPDKLPSSLIGLNMSYNDLSGNIPQNLRNKFDITSFLPGNPSLIIPKAGGPSTNSVPHHISGGGKHGSK RNITIAIIVATVGAAAMVAFVLLAYQRAQRKEFHGRSDFSGQTAMEDAKLGRSSRISLFKFQLNAHRPPTSLSFSNNHLLTANSRSLSGQTESATEIVEH SLYEGMMASSSIPNLLDDHPTTSGRKSSPGSPLSSSPRFVEPAKLDVYSPDRLAGELSFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTV KWLRVGLVKHKKEFAKEVKKIGSIRHPNIVPLRAYYWGPREQERLLLADYIQGDSLALHLYETTPRRYSLLSFSQRLKVAVDVARCLLYLHDRGMLHGNL KPANILLEGPDYNTRLTDYGLHRLMTPAGIAEQILNLGALGYRAPELDNASKPAPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVQLCDQE GRRMDCIDRDIAGGEEPTKAMDDLLAISLKCILPVNERPNIRQVFDDLCSISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	0	1
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	3.00	0.7922
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	3.87	0.8318
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053800 [exp]	4.89	0.7931
AT4G36945			PLC-like phosphodiesterases su...		Potri.005G139400 [exp]	6.00	0.8071
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	11.04	0.8150
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	11.48	0.8061
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	14.73	0.7582
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	14.96	0.7945
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.014G146200 [exp]	15.29	0.7738
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	18.43	0.8022

Compare expression of checked genes

Potri.005G083000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.