Plant FIBer expression Database

Potri.005G083100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74040 982 / 0 IPMS2, MAML-3, IMS1 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1)
AT1G18500 974 / 0 MAML-4, IPMS1 ISOPROPYLMALATE SYNTHASE 1, methylthioalkylmalate synthase-like 4 (.1)
AT5G23010 569 / 0 MAM1, IMS3 2-ISOPROPYLMALATE SYNTHASE 3, methylthioalkylmalate synthase 1 (.1)
AT5G23020 564 / 0 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019573
[exp]
600 / 0 AT1G74040 604 / 0.0 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1)
Lus10019574
[exp]
399 / 5e-137 AT1G18500 388 / 6e-133 ISOPROPYLMALATE SYNTHASE 1, methylthioalkylmalate synthase-like 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00682 HMGL-like HMGL-like
CL0036 PF08502 LeuA_dimer LeuA allosteric (dimerisation) domain
Representative CDS sequence
>Potri.005G083100.1 pacid=42803566 polypeptide=Potri.005G083100.1.p locus=Potri.005G083100 ID=Potri.005G083100.1.v4.1 annot-version=v4.1
ATGGCTTCCATTTCCACCACCCCGAAATTCTCCGTCTCTCAAATCTCCCTCAACAGATTTCTTTTCTCTCCGAACACCACAAAACTCTCTTTTCCTCCTT
CCATTTCCTTCCCTTCCACTTCCACTTCCCTCCTCAAAACCAAAACAATCACCTCCTCACTACCCCCCTCTTCCTCTCCCTCCCCCTCTCTCACCCGCCC
TGTCTACGTCCCCAACAAAATCCCAGACCCCAATTACGTCCGCATTTTCGATACCACTCTTCGTGATGGAGAACAATCCCCTGGCGCAACACTCACTTCC
AAAGAAAAGCTTGACATTGCTCGCCAGTTGGCTAAACTCGGGGTTGATATAATCGAGGCTGGATTCCCTGCTGCTTCAAAAGATGATTTTGAAGCTGTTA
AAATGATTGCTAATGAAGTTGGGAATCAAGTTGACAGTGAAGGCTATGTTCCTGTTATTTGTGGGTTGTCTAGGTGTAACGAGAAGGATATTAGGGCTGC
CTGGGAGGCTGTTAAGAATGCAAAAAGACCGAGGATTCATACTTTTATTGCCACCAGTGGGATTCATATGGAGTATAAGTTGAGGAAGAGTAAAGAAGAG
GTTGTGGAAATTGCATCAAGTATGGTTAGATTTGCTAGGAGTTTGGGTTGTGATGATGTTGAGTTTAGCCCTGAAGACGCTGGCAGATCAGAGAGAGAGT
TTTTATATCATATATTGGGTGAGGTTATCAAAGCTGGGGCAACAACTTTGAATATACCTGATACAGTCGGAATAACTACTCCTAGTGAGTTTGGACAATT
GATTGCCGATATAAAAGCAAACACTCCTGGCATTGAAAATGTTATCATTTCAACGCATTGTCAAAATGATCTTGGGCTTTCTACTGCCAACACTTTATCG
GGGGCATGCGCAGGCGCAAGACAAGTGGAAGTGACAATCAATGGCATTGGTGAAAGAGCTGGAAATGCTTCATTGGAGGAGGTTGTAATGGTAATTAAAT
GTCGTGGAGAGCATGTTTTAGGTGGTCTGTATACTGGGATCAATACTCGACACATCACTATGGCGAGCAAGATGGTAGAAGAGTACACAGGGTTGCATGT
GCAGCCACACAAGGCTATTGTTGGAGCTAATGCTTTTGCTCATGAAAGTGGCATACATCAGGATGGTATGCTGAAACACAAAGGTACATATGAGATTATC
TCACCTGAAGATATCGGGCTCGAACGTTCCAATGATGCTGGAATTGTCCTTGGAAAACTTAGTGGGCGGCATGCTTTGAAAGATCGACTAAATGAGCTTG
GTTATGAGCTGGATGATGCACAACTTGGCAATATATTTTGGCGTTTCAAGGCTGTAGCTGAAACGAAAAAGAGAGTTACGGATGCTGATCTGATAGCATT
GGTGTCAGACGAAGTATTTCAGCCAGAAAATGTTTGGAAGCTGCATGATTTGCAGGTTACTTGTGGAACCCTTGGTCTTTCAACTGCAACTGTTAAACTC
CTAAGTGCTGATGGGGAAGAACATGTTGCATGTTCTCTTGGAACTGGGCCTGTAGATTCAGCTTACAAGGCTGTTAACCTCATTGTGAAGGAACCAGTAA
CACTTCTTGAGTACTCCATGATTGCTGTTACAGAAGGCATTGATGCGATAGCCACTACCCGTGTTGTAATTCGTGGGGAGAACCAACATGCACCGACCCA
TGCTTTAACAGATGAACCCTTTCAACGGACATTTAGTGGATCTGGGGCAGGAATGGATATTGTTGTTTCTAGTGTCAAGGCCTACGTTGGTGCATTAAAT
AAGATGTTAGCTTTTAAACAGCAGCCATCCATGAAAAGGGTTTCTACGGAAAGAACTCCTGTGTCTGCTTGA
AA sequence
>Potri.005G083100.1 pacid=42803566 polypeptide=Potri.005G083100.1.p locus=Potri.005G083100 ID=Potri.005G083100.1.v4.1 annot-version=v4.1
MASISTTPKFSVSQISLNRFLFSPNTTKLSFPPSISFPSTSTSLLKTKTITSSLPPSSSPSPSLTRPVYVPNKIPDPNYVRIFDTTLRDGEQSPGATLTS
KEKLDIARQLAKLGVDIIEAGFPAASKDDFEAVKMIANEVGNQVDSEGYVPVICGLSRCNEKDIRAAWEAVKNAKRPRIHTFIATSGIHMEYKLRKSKEE
VVEIASSMVRFARSLGCDDVEFSPEDAGRSEREFLYHILGEVIKAGATTLNIPDTVGITTPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLS
GACAGARQVEVTINGIGERAGNASLEEVVMVIKCRGEHVLGGLYTGINTRHITMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEII
SPEDIGLERSNDAGIVLGKLSGRHALKDRLNELGYELDDAQLGNIFWRFKAVAETKKRVTDADLIALVSDEVFQPENVWKLHDLQVTCGTLGLSTATVKL
LSADGEEHVACSLGTGPVDSAYKAVNLIVKEPVTLLEYSMIAVTEGIDAIATTRVVIRGENQHAPTHALTDEPFQRTFSGSGAGMDIVVSSVKAYVGALN
KMLAFKQQPSMKRVSTERTPVSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74040 IPMS2, MAML-3, ... SOPROPYLMALATE SYNTHASE 2, 2-i... Potri.005G083100
[exp]
0 1
AT1G77360 Tetratricopeptide repeat (TPR)... Potri.017G126600
[exp]
2.44 0.8876
AT5G58240 FHIT FRAGILE HISTIDINE TRIAD (.1.2) Potri.019G133101
[exp]
3.16 0.9004
AT3G13460 ECT2 evolutionarily conserved C-ter... Potri.019G034300
[exp]
3.46 0.8931
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Potri.004G164000
[exp]
4.79 0.9238
AT5G07900 Mitochondrial transcription te... Potri.001G035000
[exp]
7.14 0.8937
AT5G64840 ABCF5, ATGCN5 ATP-binding cassette F5, gener... Potri.005G084800
[exp]
10.58 0.8778 GCN2.2
AT3G16260 TRZ4 tRNAse Z4 (.1) Potri.001G186900
[exp]
10.95 0.8868
AT5G07670 RNI-like superfamily protein (... Potri.002G143200
[exp]
11.66 0.8759
AT1G08610 Pentatricopeptide repeat (PPR)... Potri.019G019200
[exp]
13.03 0.8809
AT1G77405 Pentatricopeptide repeat (PPR)... Potri.002G080300
[exp]
13.96 0.8897

Potri.005G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.