Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64940 1068 / 0 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 530 / 3e-179 Protein kinase superfamily protein (.1.2.3) AT1G79600 246 / 5e-71 Protein kinase superfamily protein (.1) AT5G24970 243 / 2e-69 Protein kinase superfamily protein (.1.2) AT1G71810 231 / 8e-66 Protein kinase superfamily protein (.1) AT4G31390 228 / 2e-64 Protein kinase superfamily protein (.1.2) AT3G24190 214 / 8e-59 Protein kinase superfamily protein (.1) AT2G39190 204 / 1e-55 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24810 188 / 2e-49 ABC1 family protein (.1.2) AT1G65950 175 / 1e-46 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082500 [exp] 1214 / 0 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 528 / 3e-178 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 239 / 1e-68 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 235 / 1e-66 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 230 / 3e-65 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 217 / 1e-60 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 217 / 8e-60 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 205 / 1e-55 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G276600 [exp] 172 / 3e-44 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036636 [exp] 1055 / 0 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 1032 / 0 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 536 / 0 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 530 / 4e-174 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035701 [exp] 250 / 4e-72 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 233 / 4e-66 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 209 / 2e-57 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 203 / 1e-55 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 199 / 1e-53 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 194 / 6e-52 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.005G083200.12 pacid=42802673 polypeptide=Potri.005G083200.12.p locus=Potri.005G083200 ID=Potri.005G083200.12.v4.1 annot-version=v4.1 ATGGCTTCTTCTTTACCCCTGCCAGAGCTCACTTTCATCTCTCCACAAACCAGAACTCGGAAACATCACCACCACCTACTTCCTCTCTCTAGACACTCTC TTTCTAAACTAAATGTTTCTAGTAAAAAACTTAAATTCAATATTCCTCTTCGGACTCCAGTGGTTCGAGCTTTGAGTGAGGATACTGCAGTGATCGATGA GAGAGAGCGAGAAATTTTGAAAGAACTGAATGGAAATGGGAACGGAAGAGTGAATGGATCAGTGGAGAGGTATGTAAATGGTAGAGTTGTGAGTGTGGAG GAGGGAGAGAGTAGTAGTAATGGGAGTTTGATGAAGTATGCGAATGGAAATGGTGTGGCAGCCACGGCGACGGCGAAGATTGTGGGGGAGGAGGAAAAGG AAGGGTTGAAGGAGGATGGAAGGAAGAAGAGGATAGAGGAAATTGGGAAAGAAGAGGCTTGGTTTAAGCGTGCTGGTCAACAAGTTGAGGTTTCTGTTGT ACCTGGAGGGCGTTGGAGTAGATTCAAGACCTACTCAACAATACAAAGGACTTTGGAAATATGGGGATTTGTTTTAACATTTATCTTCAAGGCTTGGCTG AACAGCCAAAAATTCTCTTACCAGGGAGGAATGACAAAGGAGAAAAAAGTTGCAAGGAGGAAGGCCCTTGCCAAGTGGTTAAAGGAAAGCATATTAAGAT TAGGTCCAACATTCATAAAAATTGGTCAGCAGTTCTCTACAAGAGTGGATATTCTTGCTCAAGAATATGTTGATCAATTGTCTGAGCTTCAGGATCAAGT TCCTCCATTTCCATCAGAGACTGCTGTTTCTATTGTTGAGGAAGAGCTTGGAGCTCCAGTGGATGATATCTTTGATCAATTTGACTACGAACCCATAGCT GCCGCAAGTCTTGGTCAAGTTCACCGTGCAAGATTGAAAGGACAGGAAGTTGTGATTAAAGTCCAAAGACCTGGTCTCAAGGATCTTTTTGATATTGACC TAAAAAACCTGAGGGTAATAGCTGAATATCTTCAAAAGATTGACCCAAAGTCAGATGGTGCAAAGAGGGACTGGGTTGCAATATATGATGAATGTGCAAG TGTCTTGTATCAGGAGATTGATTATACTAAGGAAGCTGCTAATGCAGAACTGTTTGCAAGTAATTTCAAAAAGATGGAATATGTAAAAGTCCCAACAATA AATTGGGAATACACCACTCCACAGATTCTGACAATGGAGTATGTCCCAGGGATCAAAATAAACAAAATTCAAGCTTTAGATCAATTGGGTGTTGATCGCA AAAGATTGGGACGATATGCGGTTGAATCTTATTTGGAACAAATTCTATCTCATGGATTCTTCCATGCTGACCCTCATCCAGGAAATATTGCTGTTGATGA TGTCAATGGGGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGTATCAGTCCAAACATTCGAGAAGGGTTGCTGGAAACATTCTATGGGGTTTAT GAAAAGGATCCAGATAAGGTCCTTGAGGCAATGGTACAAATGGGTGTCCTTGTGCCTACTGGAGACATGACAGCTGTCAGACGAACTGCACAATTCTTCC TCAACAGTTTTGAAGAGCGTCTTGCTGCTCAAAGAAGAGAGAGAGAAATGGCAACAACAGAACTTGGATTTAAAAAACAATTGACCAAGGAGGAAAAGAT GGAGAAAAAGAAGCAACGTCTGGCTGCAATAGGGGAAGATTTATTATCCATTGCAGCAGATCAACCTTTCCGTTTTCCTGCCACTTTCACATTTGTTGTG AGAGCATTTTCAGTATTGGATGGCATTGGGAAAGGCCTTGACCCTCGGTTTGATATTACTGAGATTGCCAAACCCTATGCACTCGAGCTGCTAAGATTTC GTGAAGCTGGAGTTGAAGTTCTCTTGAAGGACTTCAGAAAGAGGTGGGACAGGCAGTCTCGTGCATTCCACAACTTATTTAGACAGGCTGATAGAGTTCA AAAGCTTGCTGAAACTATCCAACGACTGGAGCAAGGTGATTTGAAGCTTCGAGTTCGAACTCTGGAGGCTGAGAGGGCATTCCAGCGTGTTGCAGCTGTT CAGAAGACAGTAGGGAGTGCTGTAGCTGCTGGAAGTCTAATTAACCTTGCAACGATTTTATTTCTCAACTCCATTCGAGTACCAGCCACTGCAGCATCCA TCCTTTGTGCATTTTTCAGTTTCCAAGTTCTCTTTGGCATTATAAAGGTGAAAAGGTTAGATCAACAGGAAAGGTTGATAACAGGAACTGCTTAA
AA sequence Show only first row Show all	>Potri.005G083200.12 pacid=42802673 polypeptide=Potri.005G083200.12.p locus=Potri.005G083200 ID=Potri.005G083200.12.v4.1 annot-version=v4.1 MASSLPLPELTFISPQTRTRKHHHHLLPLSRHSLSKLNVSSKKLKFNIPLRTPVVRALSEDTAVIDEREREILKELNGNGNGRVNGSVERYVNGRVVSVE EGESSSNGSLMKYANGNGVAATATAKIVGEEEKEGLKEDGRKKRIEEIGKEEAWFKRAGQQVEVSVVPGGRWSRFKTYSTIQRTLEIWGFVLTFIFKAWL NSQKFSYQGGMTKEKKVARRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELGAPVDDIFDQFDYEPIA AASLGQVHRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANAELFASNFKKMEYVKVPTI NWEYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVY EKDPDKVLEAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATTELGFKKQLTKEEKMEKKKQRLAAIGEDLLSIAADQPFRFPATFTFVV RAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVLLKDFRKRWDRQSRAFHNLFRQADRVQKLAETIQRLEQGDLKLRVRTLEAERAFQRVAAV QKTVGSAVAAGSLINLATILFLNSIRVPATAASILCAFFSFQVLFGIIKVKRLDQQERLITGTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.005G083200 [exp]	0	1
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	1.00	0.9862
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	2.44	0.9736
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	4.47	0.9686
AT4G24090			unknown protein		Potri.001G084500 [exp]	4.58	0.9696
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	4.89	0.9577
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	6.00	0.9592
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	7.07	0.9653	ANTR2.2
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	8.66	0.9530
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	10.81	0.9564
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	11.22	0.9396

Compare expression of checked genes

Potri.005G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.