Plant FIBer expression Database

Potri.005G083500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44270 656 / 0 ROL5 repressor of lrx1 (.1.2)
AT1G76170 599 / 0 2-thiocytidine tRNA biosynthesis protein, TtcA (.1)
AT3G24560 43 / 0.0004 RSY3 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009739
[exp]
619 / 0 AT2G44270 608 / 0.0 repressor of lrx1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01171 ATP_bind_3 PP-loop family
CL0039 PF16503 zn-ribbon_14 Zinc-ribbon
Representative CDS sequence
>Potri.005G083500.2 pacid=42803237 polypeptide=Potri.005G083500.2.p locus=Potri.005G083500 ID=Potri.005G083500.2.v4.1 annot-version=v4.1
ATGGCGGAAAATCACAAGAAAGCTGCGGGTCGCCTGTGTTACCTTTGTAACCAAAGAAGGGCTGCCCTCAAAAGACCTAAAACCCTAGAGCAGATATGCA
GGGAGTGTTTCTACGAGGTATTTGAGGAAGAGATTCATCAGGTGATTGTGAAAAACCAGCTGTTTAAGCCCGGTGAGCGGATTGCAATCGGTGCCTCCGG
TGGAAAAGATTCGACAGTGCTTGCTTATGTTTTATCCGAGTTGAATCGTCGACACAATTATGGGCTGGATCTCTTCCTCTTGTCTGTTGATGAAGGCATT
ACTGGATATAGGGATGACTCCCTTGAGACGGTTAAAAGAAATGAAATTCAGTATGGGCTGCCGTTAAAGATTGTTTCCTACAAGGATTTGTATGGATGGA
CGATGGATGAGATAGTGAAGATGATTGGTTTAAAGAACAATTGTACATTTTGTGGTGTTTTTCGTAGGCAGGCCCTTGATCGTGGCGCTGCATTGTTGAA
AGTAGACAAGCTGGTTACCGGACACAATGCAGATGATATTGCCGAAACTGTACTCTTGAATATATTGCGAGGGGATATTGCTAGATTGAGTAGATGCACT
TCAATAACCACTGGGGAGGATGGACCAATTCCAAGATGCAAGCCATTTAAGTACACCTATGAGAAGGAGATTGTTATGTATGCTTATTTCAAGAGGCTGG
ACTACTTCTCCACTGAATGCATATATTCACCTAATGCATATCGTGGTTTTGCTCGTGAGTTCATCAAAGATTTGGAGAGGATGAGACCAAGGGCGATACT
TGACATTATCAAATCAGGGGAAGATTTTAGAATTTCCACTTCTACGAAAATGCCGGAGCAGGGGACATGTGAACGATGTGGTTACATTTCAAGCCAGAAA
TGGTGTAAAGCCTGTGTTCTGCTTGAAGGACTGAATAAGGGTTTGCCTAAGCTGGGAATTGGACGAAGTCGAGGCCTAGATAACAACCATAGGAAGGATG
TGAAACAAAGTAATGGAACAAAGAATATTGAGGGCAAACAATGTGGAAGTTTGGACTTCTGA
AA sequence
>Potri.005G083500.2 pacid=42803237 polypeptide=Potri.005G083500.2.p locus=Potri.005G083500 ID=Potri.005G083500.2.v4.1 annot-version=v4.1
MAENHKKAAGRLCYLCNQRRAALKRPKTLEQICRECFYEVFEEEIHQVIVKNQLFKPGERIAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGI
TGYRDDSLETVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLSRCT
SITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQK
WCKACVLLEGLNKGLPKLGIGRSRGLDNNHRKDVKQSNGTKNIEGKQCGSLDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44270 ROL5 repressor of lrx1 (.1.2) Potri.005G083500
[exp]
0 1
AT2G36070 ATTIM44-2 translocase inner membrane sub... Potri.002G038300
[exp]
1.41 0.8570 Pt-ATTIM44.1
AT4G31520 SDA1 family protein (.1) Potri.008G182900
[exp]
4.24 0.8627
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
8.12 0.8449
AT5G57120 unknown protein Potri.006G073100
[exp]
9.16 0.8435
AT5G17930 MIF4G domain-containing protei... Potri.013G061400
[exp]
11.83 0.8308
AT1G31660 unknown protein Potri.011G112500
[exp]
12.48 0.8375
AT1G36990 unknown protein Potri.005G172100
[exp]
14.42 0.8080
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
15.81 0.8205
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
20.73 0.8395
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
20.78 0.8247

Potri.005G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.