Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64930 273 / 3e-84 HYS1, CPR5 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082100 [exp] 714 / 0 AT5G64930 252 / 2e-76 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035856 [exp] 414 / 2e-139 AT5G64930 342 / 2e-111 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1) Lus10016818 [exp] 407 / 9e-136 AT5G64930 340 / 3e-110 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G083600.1 pacid=42804561 polypeptide=Potri.005G083600.1.p locus=Potri.005G083600 ID=Potri.005G083600.1.v4.1 annot-version=v4.1 ATGGATCGCACCGCTCCATCTCCTTCCCTCTCGACCCAAGAACCGACCCCCACTAATCATCCAAATCCAACTGTGGAGAATGATTGTAACCCAAAAACCA TCAACAAGAGGAAGAAAAAAAGAGTCTTTAAAGACACAGCCATAACACCGCCCCCATCACAACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGAA TAAAAGTCCGCGCGTGTCACACAAACGCAGAAGCCCTAAGGTGGTTTTTGCTCCTGTTAGGCGCAGGGGTGGTATAGGGGATGATGGTGTGGAGGCTATT GCATTACCTCTTGGAATGTCTTTTGCTGCTGTTGTTGCTCAGGTTCTGGAGAGGAAAGATGCTGCAGGTGAAAGGATGTCTGTTGATCATCTTTCAATGA TCTGCTCTTCAGCTGTCAGAGAATCTTTAGCCAGTGTCTTTGGTAACAAATTTGATTTCTTCGCAAGGAATTTTCAGAAATCATTTGGGAGCACATTGAG TACTCTTAGATTGATTAATGAATCGTCTATCAACTTGGGACCGCATGCCTTAATTCACCAGAACCTAGAAATTTCTGCTTCAAACAGGACTCTCAATAAA AGAGATGGCTGTACAAATAGTGCCTGTATGAAAGACTCGGATTCAGAAGCAGACTTGCCCAATAATTCAACTGAGGGTCAAACCCATAAACCCGAGCAGG TAGAAGAGAACATATCAGTGGGTTGCTTGGGTCAAGAACTTGTCCTGCACGGGCCAGCCAACCAACTGGCTTGTGCTCCTAGTTCATACCCTTTAATTAA CATGTATAACAATATTGAGAAATCTGTTGTGGAGCAAGTCCGTTCTAATGACCTGAAGGCATTGGAGATTGGTGTTGCAATGAAAAGATTGAAGTTGGAT GAGGAATTGTTGAATCTCACCTCAGAATCAAACTATCTGGAGAGATCAAAATTAGTAATGGGCATGTCAAAGGCATCCTTTAAAGCTGACAAGTTCAAGA CTCAATTAGAAGACACAAGGCATGCTGAGCTGCATAGAAATTGCATTGACTGTCTTGTTGCTGGTTTGTTCATCATGTCAGCCTCGCTTTCATACAGTAC ATATGTTTATTCATACAGAAGGATCAAAGAAGCTACTGCATCCTGCTCTCATTCACACAAGGTGTCCAAGTTCGGGTGGTTCGTCAGGCCTTTTTCATCC TTAAATTCCTGGCTGCAGATACTGATATGTCAAGTTCAAGTTGTGAGCCAAATGGCGTTTGGAATCCTAATTATTCTTGCAGTTGCTTTTTTGCTTGTAC AACGGTCCTCGAGTTCACACCGGACAATGCCAATAACTTTCATTCTGCTACTGTTGGGAGCTGTCTGTGGTTTTACTGGCAAACTTTGTGTAGATACACT GGGAGGGAGTGGATCACTCTGGCTTCTGTATTGGGAAGCTTTATGCTCGCTGCAGTTCTTCTCAAATGTATGTACACCAACTTTGTTCCGTATACTTCAT GGCCCCGTCGTTGCAATCTCTCAAGGGACAAAACCCAACACAATATTTCCATATTGGCTCCGGAAATTACTCTTCTACGCTACTTCCGTCCTGTTTCTAC CATTGTGCTGTGGTCTCTTGCCATTTGCTGGCCCAGGTGAATGGACAAATCATTTTTGTCTGTTAAAACCGAACATGATGTGTCCCAAAACGGGTGATTG A
AA sequence Show only first row Show all	>Potri.005G083600.1 pacid=42804561 polypeptide=Potri.005G083600.1.p locus=Potri.005G083600 ID=Potri.005G083600.1.v4.1 annot-version=v4.1 MDRTAPSPSLSTQEPTPTNHPNPTVENDCNPKTINKRKKKRVFKDTAITPPPSQPTSSSSSSSSSVNKSPRVSHKRRSPKVVFAPVRRRGGIGDDGVEAI ALPLGMSFAAVVAQVLERKDAAGERMSVDHLSMICSSAVRESLASVFGNKFDFFARNFQKSFGSTLSTLRLINESSINLGPHALIHQNLEISASNRTLNK RDGCTNSACMKDSDSEADLPNNSTEGQTHKPEQVEENISVGCLGQELVLHGPANQLACAPSSYPLINMYNNIEKSVVEQVRSNDLKALEIGVAMKRLKLD EELLNLTSESNYLERSKLVMGMSKASFKADKFKTQLEDTRHAELHRNCIDCLVAGLFIMSASLSYSTYVYSYRRIKEATASCSHSHKVSKFGWFVRPFSS LNSWLQILICQVQVVSQMAFGILIILAVAFLLVQRSSSSHRTMPITFILLLLGAVCGFTGKLCVDTLGGSGSLWLLYWEALCSLQFFSNVCTPTLFRILH GPVVAISQGTKPNTIFPYWLRKLLFYATSVLFLPLCCGLLPFAGPGEWTNHFCLLKPNMMCPKTGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Potri.005G083600 [exp]	0	1
AT4G31410			Protein of unknown function (D...		Potri.018G006400 [exp]	5.29	0.8058
AT5G59830			unknown protein		Potri.001G236000 [exp]	5.65	0.8342
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.017G031700 [exp]	5.83	0.8349
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.018G013500 [exp]	16.06	0.7627
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	17.57	0.8069
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Potri.019G069000 [exp]	19.59	0.7896
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Potri.006G125200 [exp]	22.58	0.7887
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.006G272900 [exp]	23.36	0.7774
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	27.11	0.7933
AT3G48120			unknown protein		Potri.015G070100 [exp]	29.49	0.7857

Compare expression of checked genes

Potri.005G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.