Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22010 1726 / 0 RKP related to KPC1 (.1.2) AT1G35470 54 / 7e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09250 48 / 4e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 48 / 4e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 48 / 4e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G22250 47 / 4e-05 RING/U-box superfamily protein (.1) AT4G03965 44 / 0.0002 RING/U-box superfamily protein (.1) AT3G25030 43 / 0.0008 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081900 [exp] 2243 / 0 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.004G003101 [exp] 51 / 1e-06 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.013G108400 [exp] 49 / 2e-05 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G224200 [exp] 47 / 2e-05 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) Potri.014G158900 [exp] 42 / 0.0008 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035857 [exp] 1835 / 0 AT2G22010 1667 / 0.0 related to KPC1 (.1.2) Lus10016817 [exp] 1514 / 0 AT2G22010 1406 / 0.0 related to KPC1 (.1.2) Lus10009316 [exp] 54 / 5e-07 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 50 / 1e-05 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 48 / 2e-05 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00622 [poplar] [flax] SPRY SPRY domain CL0004 [poplar] [flax] PF10408 [poplar] [flax] Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence Show only first row Show all	>Potri.005G083800.4 pacid=42802725 polypeptide=Potri.005G083800.4.p locus=Potri.005G083800 ID=Potri.005G083800.4.v4.1 annot-version=v4.1 ATGGCAGAAGAGGGAAAACGGGTTGGAGGGATTTCTTCTGGCTTGGCTGTATTATTGAATGGTGAAGATAGAAAGGAGAATTTGTCGAAAACCCGACTTG TTTCATCTTGTGATGATTTTGGTAATCAGCCTGTGGAGCGAGCTCTTGAATATATCTTTGGTCTCCCAAACAGATCACTTGGTCAATTGACCGGTCCAGT TGATGCTAAATTAGTTAGCTCTATTATAAAGAATGAGTTTTCAAAATTTTGTGTCAAATCTGGTGATTTGGTTGATAACAGAGATGGGGTTCATATTAGT AAGGATGGCTGTGAATCTCAGCTGGTTGGGCTTGAAGAATTGAGCATCTGTGGTGATATTAGAATCATTAAACCCCCTTTGCTTGTAGAAAGCTTAGCAA TGTTCAGTAGTGCTAGGTCCAATGCTTATGTTTGGAAAGGGAAATGGATGTATGAAGTTCTATTGGAAACTTCTGGTGTACAGCAGCTTGGATGGGCAAC TCGTTCTTGTCCTTTTACTGATCACAAGGGTGTAGGTGATGCAGATGATTCATATGCATTTGACGGGAAAAGGGTTAGCAAGTGGAATAAGGATGCTGAG CCATACGGTCAGCCATGGGTTGTTGGTGATGTCATTGGATGTTGCATTGATCTGGATCATGATGAGATATTGTTCTATAGAAATGGCGTATCCCTTGGAG CAGCCTTTCGTGGTATCCGCAAGATGGGACCTGGATCCGGGTATTACCCAGCGATCTCTCTTTCTCAAGGTGAACGCTGCGAATTAAATTTTGGGGCGCG TCCCTTCAAGTACCCCATTCAGGGGTTTCTTCCCCTTAAAGCGCCTCCTCCTGCAAATCTTTTGGCTGTGCAGTTGCTTCAGTGCTTATCAAGGCTGTCA GATACGCTAGGCGTGGAGCGGGCTGAGAGTTCTTTAGTTGGTAAACTGAGGAGATTGAAGAGGTTTGTGTCACTCGAAGAAGTATTTTATCCTGTCTGTC ATGGGATATGCGAGGAATTCTTCTCTGTACTTGAGGGATATTCCGGGAGCACTGAGTATGTGGCATGGGGTCCACTTCTTTCATTCATGATGGAGGTCTT CAGAGTGCAAGCACCACATGACTATTCAGTTTTGGATAGGTTTATTGATGTATTTCTAGAGTTTCAAGAATCATGCCTGATGTTTGAGCATATTATCAAT GCCCTTTCAAGTTGCTGCAAAACAGCATCTTTGGTTTTAACTGAATGCCCATACTCCGGATCTTATTCTTATCTTGCAATGGTATGCCATATCTTACGAC GGAAAGAATTGATGGTTCTTTGGTGGAAGTTGGCTGATTTTGAATTATTGTTTGAAGGTTTTCTATCGCAAAAGATTCCAAACAAGCAGGACCTTCAATG CATGGTGCCTTCTGTTTGGTGGCCTAGTTCAGGTGAGGATATGTATAATGATGGAAGAAGCATGGTGCTGACAACTACAGCTTTATCTGAAGCTATCAAT AAGATAGAGGAGAAGCATAGGGACCTATGTCTCTTGGTCATGCAATTTGTACCACCTACAGCACCTGCTCAATTACCTGGCTCAGTGTTTAGGACATTTT TACAAAATATTCTATTGAAGAATAGAGGAGCAGATCGCAGTGTGCCACCTCCTGGAGTTTCAAGCAATTCTGTTCTTGTTTCTTTGTACACAGTTATACT TCATTTTTTATCTGAAGGCTTTGCCATGAGAGACATTTGTGGCTGGTTGAAGAGGTGTGAACCCTGTGGTCATGATGTTGGATTTCTCCACAGAGGTGGT GAACAAAGTTTCCCTGTAGATTTATTTCTCAAAAATGATCCTCATCGAACTGACATTTCTAGACTTGGGGGATCATTTAGTCATCTTTCAAAATCTCATC CTGTATATGATCAAGAAGCAGAAGTAATCCGGTGGGAGGAAGGTTGTATGGATGATGAAGAAACCAGAGTAACACATAAAACCACACAGAAACCATGTTG CTGTTCAAGTCATGACATTGAATTGTCAAAAATCTCAAAGCATCAAATTAGATACAATGCTAAAGGTTCTCGTGTCCATTGTGGTCCTATTCCAGACAGG TCTGCTCATGTTGCTGCAGAATGCAGTGAAGGAAGTTTGAATGATGAGATAGCCGACAAACCTAGTACGAGTGATCAATCTGAACCTGATTTTGGTTACC GTCCAATGCGGGATATTAGGATTGTACAAAGGGAGAGTGATGTGTCTTCAGCTACACTGAGAGAAGAAGAACTGCTAGATACATTGCTATTGTTGTATCA CATAGGTGTCGCACCAAACTTTAAGCAGGCATCACACTACATGTCTCATCAGGCACAATCAATATCACTCCTGGAAGAAACCGATAAACAAATAAAAGAA CGTGTTTGTAGTGAGAAATTAAGACAGCTGAAAGAAGCTCGAAATGATTATCGTGAAGACATAATTGATTGTGTCAGACATTGTGCATGGTATCGCATCT CTCTTTTCTCGCGGTGGAAGCAACGAGCGATGTATGCAACATGCATATGGATAGTCCAACTACTTCTGGTTCTTAGCAGAGTGGATTCCTTATTTATTTA TATTCCTGAATTTTATCTTGAAACCCTGGTTGATTGCTTCCATGTGCTGCGCAAGAGTGATCCCCCATTCGTACCCCCTGCAATATTTATCAAGCAAGGA CTTGCTTCATTCGTAACTTTTGTCGTTTCCCACTTCAATGATCCGAGGATATTGAGTGCCGATCTTAGGGATCTTCTCCTCCAATCTATTTCAGTTCTGG TACAGTATAAGGAGTATTTGGCAGCTTTTGAGAGCAATGAAGCAGCCACGCAAAGAATGCCAAAAGCTCTATTGTCAGCATTTGACAACAGATCTTGGAT CCCAGTGACCAACATTCTTTTGCGGTTGTGCAAGGGTTCTCGTTTTGGTTCTTCAAAGCATGGGGAATCATCGTCGTCGTCGTCAATTGTTTTCCAAAAT TTGCTGCGTGAAGCTTGCATCGACGATGAAGAGTTGTTCTCAGCTTTTCTGAATCGACTATTTAATACACTCAGCTGGACAATGACTGAGTTCTCTGTTT CCATTCGGGAAATGCAAGAAAAATACCAGGTTTTGGAGTTTCAGCAAAGAAAATGCTGCGTCATATTTGATCTCTCATGCAACCTTGCAAAGGTTTTAGA GTTCTGTACTCGTGAGATCCCTCAAGCATTCCTATCTGGAGCTGATACGAACCTTCGGAGGCTAACTGAATTGATAGTCTTTATTCTCAACCACATTACT TCAGCTGTGGATGCTGAGTTTTTTGATTTGTCTCTCAGAAGACATGGTCAGTCTCTGGAGAAAGTAAATCGAGGCATGATATTAGCACCTCTTGTAGGGA TCCTCTTGAATTTATTGGATGCAAGTGTGGAGATGGAATGTGGAGAGCGGAATGATGTTGTGGGTGTTTTTGCAAGCATGGACTGCCCTGATACTGTGCA TTGTGGATTCCAGTATCTCTTGGAGTACAACTGGGCTGGATCCTCGAGAGGGGATGCTTATAGTGGGAAACTTCGGCAGCTTGAGAGTTTCTTGAACCTT CTTATTAGCAGGATTGAGTTGCAACAAATTGAAAGGATGAAATATGGGGAAGAAACAGAAGCCGATGACAACACCTGCTGCATTTGTTATACTTGTGAAT CAGATGCCCAGTTTGTCCCTTGTTCACATAAGTCCTGCTATGGTTGCATAACCAGGCATCTCTTAAATTGCCCAAGATGTTTCTTTTGCAATGCAACAGT CTTGGAGGTTATTAAGATTGGTGAAAACAGAGCTTAA
AA sequence Show only first row Show all	>Potri.005G083800.4 pacid=42802725 polypeptide=Potri.005G083800.4.p locus=Potri.005G083800 ID=Potri.005G083800.4.v4.1 annot-version=v4.1 MAEEGKRVGGISSGLAVLLNGEDRKENLSKTRLVSSCDDFGNQPVERALEYIFGLPNRSLGQLTGPVDAKLVSSIIKNEFSKFCVKSGDLVDNRDGVHIS KDGCESQLVGLEELSICGDIRIIKPPLLVESLAMFSSARSNAYVWKGKWMYEVLLETSGVQQLGWATRSCPFTDHKGVGDADDSYAFDGKRVSKWNKDAE PYGQPWVVGDVIGCCIDLDHDEILFYRNGVSLGAAFRGIRKMGPGSGYYPAISLSQGERCELNFGARPFKYPIQGFLPLKAPPPANLLAVQLLQCLSRLS DTLGVERAESSLVGKLRRLKRFVSLEEVFYPVCHGICEEFFSVLEGYSGSTEYVAWGPLLSFMMEVFRVQAPHDYSVLDRFIDVFLEFQESCLMFEHIIN ALSSCCKTASLVLTECPYSGSYSYLAMVCHILRRKELMVLWWKLADFELLFEGFLSQKIPNKQDLQCMVPSVWWPSSGEDMYNDGRSMVLTTTALSEAIN KIEEKHRDLCLLVMQFVPPTAPAQLPGSVFRTFLQNILLKNRGADRSVPPPGVSSNSVLVSLYTVILHFLSEGFAMRDICGWLKRCEPCGHDVGFLHRGG EQSFPVDLFLKNDPHRTDISRLGGSFSHLSKSHPVYDQEAEVIRWEEGCMDDEETRVTHKTTQKPCCCSSHDIELSKISKHQIRYNAKGSRVHCGPIPDR SAHVAAECSEGSLNDEIADKPSTSDQSEPDFGYRPMRDIRIVQRESDVSSATLREEELLDTLLLLYHIGVAPNFKQASHYMSHQAQSISLLEETDKQIKE RVCSEKLRQLKEARNDYREDIIDCVRHCAWYRISLFSRWKQRAMYATCIWIVQLLLVLSRVDSLFIYIPEFYLETLVDCFHVLRKSDPPFVPPAIFIKQG LASFVTFVVSHFNDPRILSADLRDLLLQSISVLVQYKEYLAAFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSRFGSSKHGESSSSSSIVFQN LLREACIDDEELFSAFLNRLFNTLSWTMTEFSVSIREMQEKYQVLEFQQRKCCVIFDLSCNLAKVLEFCTREIPQAFLSGADTNLRRLTELIVFILNHIT SAVDAEFFDLSLRRHGQSLEKVNRGMILAPLVGILLNLLDASVEMECGERNDVVGVFASMDCPDTVHCGFQYLLEYNWAGSSRGDAYSGKLRQLESFLNL LISRIELQQIERMKYGEETEADDNTCCICYTCESDAQFVPCSHKSCYGCITRHLLNCPRCFFCNATVLEVIKIGENRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	0	1
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	2.44	0.9079
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	3.74	0.8917
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	3.87	0.8779
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	4.89	0.8809
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	5.47	0.8757
AT3G45830			unknown protein		Potri.001G233800 [exp]	6.24	0.8889
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	8.30	0.8448
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	9.38	0.8458
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	9.89	0.8721
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	11.53	0.8472

Compare expression of checked genes

Potri.005G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.