Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21960 449 / 8e-160 unknown protein AT1G56180 84 / 4e-18 unknown protein AT5G27290 67 / 2e-12 unknown protein AT1G54680 50 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171400 [exp] 84 / 7e-18 AT1G56180 500 / 6e-178 unknown protein Potri.013G029000 [exp] 64 / 3e-11 AT5G27290 451 / 5e-160 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005779 [exp] 484 / 1e-173 AT2G21960 465 / 6e-166 unknown protein Lus10006822 [exp] 203 / 5e-64 AT2G21960 248 / 1e-81 unknown protein Lus10006532 [exp] 85 / 3e-18 AT1G56180 510 / 0.0 unknown protein Lus10033822 [exp] 66 / 9e-12 AT5G27290 494 / 3e-177 unknown protein Lus10018966 [exp] 53 / 9e-08 AT5G27290 479 / 8e-171 unknown protein Lus10033821 [exp] 49 / 3e-06 AT1G54680 187 / 3e-58 unknown protein Lus10018965 [exp] 49 / 3e-06 AT1G54680 187 / 8e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G084400.1 pacid=42805189 polypeptide=Potri.005G084400.1.p locus=Potri.005G084400 ID=Potri.005G084400.1.v4.1 annot-version=v4.1 ATGCTAACTTCAATGGTTTCTCTGTCAAATACTACTGCATCAACATACACTGCATTTCAGTGCTGTAATCATCACCACAAGCTGCTGCAAATAAGAGCTT CTTCTGCTGCACCTGGTGTTGACCTCAAGACCCTTGAGTCTGCACTTGCTAAGAAAGACAGCAATGCTGTTAAAGAGGCACTTGATCAACTAAGGGAGGT TGGTTGGGCTAAGAGATGGAGCTCTCAGCCATATGTCTCTCGCCGTACGACATCTCTGCGGGAGCTGACGACTCTTGGAATTAAGAATGCAGAGAACCTG GCAATTCCAAGTGTTAGAAATGATGCAGCTTTTCTTTTCACAGTGGTGGGAACAACAGGCTTTTTGGGAGTCCTTGCTGGCCAGCTTCCTGGGGATTGGG GTTTCTTTGTGCCATACTTGATTGGGAGCATTTCTCTAGTTGTCCTGGCTGTGGGGAGTATTTCTCCTGGACTTCTTCAAGCTGCTATTAGTGGTTTCTC TGCAGTTTTTCCTGACTATCAGGAGAGGATAGCTAGACATGAAGCAGCTCATTTTTTAATTGGATACTTGATTGGCCTTCCTATCCTGGACTACTCATTA GATATCGGGAAAGAGCATGTCAATCTCATTGATGAAAAGCTGGAAAAGCTGATATATAGTGGGCAGCTTGATGCTAAGGAGCTAGATAGGTTGGCGGTTG TAGCAATGGCTGGACTTGCCGCAGAGGGTCTGCAATATGACAAAGTGGTTGGCCAATCTGCTGACCTTTTCACTCTTCAGAGATTTATAAATAGAAGCAA ACCACAGATCAGCAAAGACCAGCAACAGAATCTTACTAGATGGGCTGTTTTATTTGGCGGATCTCTTATTAAAAATAACAAGTCACTCCATGAAGCCCTA ATGACAGCAATGTCGAATAAGGCGACTGTATTAGAATGCATTCAAGCGATCGAGAAAGCTGCATAA
AA sequence Show only first row Show all	>Potri.005G084400.1 pacid=42805189 polypeptide=Potri.005G084400.1.p locus=Potri.005G084400 ID=Potri.005G084400.1.v4.1 annot-version=v4.1 MLTSMVSLSNTTASTYTAFQCCNHHHKLLQIRASSAAPGVDLKTLESALAKKDSNAVKEALDQLREVGWAKRWSSQPYVSRRTTSLRELTTLGIKNAENL AIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLAVGSISPGLLQAAISGFSAVFPDYQERIARHEAAHFLIGYLIGLPILDYSL DIGKEHVNLIDEKLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFTLQRFINRSKPQISKDQQQNLTRWAVLFGGSLIKNNKSLHEAL MTAMSNKATVLECIQAIEKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21960			unknown protein		Potri.005G084400 [exp]	0	1
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	1.00	0.9873
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	2.00	0.9862
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	2.23	0.9753
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	3.87	0.9780	gdcH3,Pt-GDCH.3
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	4.47	0.9769
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	4.58	0.9699	LYC.2
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	8.94	0.9699
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	9.16	0.9711
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	12.96	0.9448	F2KP.3
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	14.00	0.9583

Compare expression of checked genes

Potri.005G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.