Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 761 / 0 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT3G61880 504 / 3e-175 CYP78A9 cytochrome p450 78a9 (.1.2) AT2G46660 499 / 6e-173 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G13710 476 / 2e-164 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G01190 476 / 3e-164 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G74110 471 / 5e-162 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT2G40890 282 / 8e-89 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G07990 259 / 6e-80 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 253 / 2e-77 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 250 / 1e-76 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081200 [exp] 926 / 0 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 793 / 0 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 781 / 0 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 502 / 3e-174 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 489 / 4e-169 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 485 / 2e-167 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G054800 [exp] 479 / 8e-165 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 478 / 8e-165 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G146800 [exp] 477 / 2e-164 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036627 [exp] 826 / 0 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 810 / 0 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 746 / 0 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 508 / 1e-176 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 497 / 4e-172 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 479 / 3e-165 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10015788 [exp] 457 / 9e-158 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10001670 [exp] 414 / 6e-140 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10020847 [exp] 288 / 4e-91 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 288 / 4e-91 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G084500.1 pacid=42803893 polypeptide=Potri.005G084500.1.p locus=Potri.005G084500 ID=Potri.005G084500.1.v4.1 annot-version=v4.1 ATGGAAATCGATTTGGCGACTAAAGACACGAGTTGGTGGGTGTACACCCTTCCAGCATTTCTAGGTTCCGAAATTCTGATAGATGGATATGTTTTGTTCT CTCTTGTGATGGCCTTTGTGACCCTAGGTATTCTTACATGGGCTTTCGCTGTTGGTGGTGTTGCATGGAAAAATGGCAGAAACCGAAGAGGTCACCGCCT CATTCCTGGACCTCGAGGCTTACCCGTCTTTGGTAGCCTTCTCACCTTGTGCCGGGGCCTTGCTCACCGCACCCTGGCTTCCATGGCTTGTAGCCGAGAC AACACTCAGCTCATGGCTTTTAGCCTCGGCTCCACCCCTGTTGTTGTGGCGTCTGACCCTCATACTGCCCGAGAAATCTTGACCTCCATCCACTTTGCTG ACCGGCCAATTAAACTGTCGGCTAAGAGCCTCATGTTTAGCCGGGCCATAGGCTTTGCGCCGAGTGGCACTTACTGGCGGCTTCTAAGGAGAATAGCTTC CGGTCACTTGTTTTCTCCGCGGCGTATTTCAGCCCATGAATCCCTCCGACAGCTAGAATGCTCAACTATGTTGCGTGACATGACCAACGAACAAGAACTT AACGGTTTTGTTTCTCTAAGAAAACACTTACAGTTTGCCTCCTTGAACAACATCATGGGAAGTGTTTTTGGAAAGAGGTACGACATGGTGCACGATAGCC AAGACCTTGAGGAGCTAAGAGGCATGGTTCGAGAAGGGTTTGAGCTGTTGGGTGCATTCAATTGGTGTGACTATCTGCCATGGCTCAGCTACTTTTATGA CCCATTTCGTATAAATGAACGTTGCTTGAAACTCGTTCCTAGAGTTAGGAAACTCGTCAAGGGCATCATTGAAGAGCACAGAATCAGTAAGTCCAGAAAT GTTGGTGACAGTTGTGATTTTGTTGATGTTTTACTGTCTTTAGATGGTGAAGAGAAGCTCCAAGACGATGACATGGTCGCGGTCTTATGGGAAATGATTT TTAGAGGGACAGATACAACTGCTCTGTTAACTGAGTGGGTTATGGCAGAGTTGGTCTTGCACCCAGAGATTCAAGAAAAGCTTCATAGTGAGCTAGACAT GGCCGTGAAAGACGGAAGCTTGGCTGCCTTGACAGATGCTGACGTAGAAAAATTGCCTTATTTGCAGGCAGTGGTGAAGGAGACTCTGAGGGTCCACCCA CCGGGTCCGCTATTGTCCTGGGCCAGGCTGTCCACGTCAGACGTCCAGCTCAACAATGGAATGGTCATCCCTGCCAACACTACTGCCATGGTCAACATGT GGGCCATCACTCATGACCCTAACGTGTGGGAAGACCCGCTGGAGTTCAAGCCAGAGAGATTCATAGAAGCTGACGTGGATGTGAGGGGTAATGATCTGAG GCTTGCACCCTTTGGGGCTGGCCGGAGGGTGTGCCCTGGCAAGAAGTTAGGGTTAGTGACTGTGACACTTTGGGTGGCCAAGTTAGTGCACTGTTTCAAG TGGAATCGAGATGTGGATCACCCAGTTGACCTAAGTGAAGTCCTGAAGCTGTCTTGTGAGATGAAGTACCCCCTCCACGCCGTGGCTGTGGGAAGGAAAT AA
AA sequence Show only first row Show all	>Potri.005G084500.1 pacid=42803893 polypeptide=Potri.005G084500.1.p locus=Potri.005G084500 ID=Potri.005G084500.1.v4.1 annot-version=v4.1 MEIDLATKDTSWWVYTLPAFLGSEILIDGYVLFSLVMAFVTLGILTWAFAVGGVAWKNGRNRRGHRLIPGPRGLPVFGSLLTLCRGLAHRTLASMACSRD NTQLMAFSLGSTPVVVASDPHTAREILTSIHFADRPIKLSAKSLMFSRAIGFAPSGTYWRLLRRIASGHLFSPRRISAHESLRQLECSTMLRDMTNEQEL NGFVSLRKHLQFASLNNIMGSVFGKRYDMVHDSQDLEELRGMVREGFELLGAFNWCDYLPWLSYFYDPFRINERCLKLVPRVRKLVKGIIEEHRISKSRN VGDSCDFVDVLLSLDGEEKLQDDDMVAVLWEMIFRGTDTTALLTEWVMAELVLHPEIQEKLHSELDMAVKDGSLAALTDADVEKLPYLQAVVKETLRVHP PGPLLSWARLSTSDVQLNNGMVIPANTTAMVNMWAITHDPNVWEDPLEFKPERFIEADVDVRGNDLRLAPFGAGRRVCPGKKLGLVTVTLWVAKLVHCFK WNRDVDHPVDLSEVLKLSCEMKYPLHAVAVGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	1.73	0.9830
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	2.23	0.9526
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	2.44	0.9818
AT2G27240			Aluminium activated malate tra...		Potri.001G217200 [exp]	3.00	0.9674
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.018G099201 [exp]	4.24	0.9441
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	4.24	0.9519
AT5G66800			unknown protein		Potri.007G042600 [exp]	5.09	0.9305
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.009G101700 [exp]	6.16	0.9197	CYP707.4
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	6.92	0.9598
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	9.79	0.9361

Compare expression of checked genes

Potri.005G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.