Plant FIBer expression Database

SK2 (Potri.005G084600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SK2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21940 304 / 2e-103 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
AT4G39540 288 / 2e-97 ATSK2 shikimate kinase 2 (.1.2.3)
AT3G26900 125 / 4e-34 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G081000
[exp]
491 / 2e-177 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5)
Potri.002G061100
[exp]
238 / 7e-78 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5)
Potri.017G062800
[exp]
130 / 9e-36 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Potri.019G048200
[exp]
41 / 0.0003 AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035843
[exp]
309 / 3e-105 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5)
Lus10036626
[exp]
291 / 2e-95 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Lus10035171
[exp]
102 / 2e-25 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Lus10032000
[exp]
69 / 4e-13 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13238 AAA_18 AAA domain
Representative CDS sequence
>Potri.005G084600.2 pacid=42803549 polypeptide=Potri.005G084600.2.p locus=Potri.005G084600 ID=Potri.005G084600.2.v4.1 annot-version=v4.1
ATGGAGGCAAATTTTGCACAAAGAATGCAAATTTCGACAACATGGATTGATACAGGCAATCTTGCAAGAAAACCAACTGGTTTTCTACGGTTTTCGGGGA
GATTAAAGGAACAGAAGAGACTCCAAGTGTTTGTTTCTGCTCAGTTTCGACCTGTAAGAGATGAAAATCGACATAGATTGGCTTCTTTTGAGGTTTCTCG
CTCTTATAACAATTCTCGAGTTTCGACGTTGGAATCTGAGAGTCTCCAGGATTTGCTTGACGATGAAGCTTTGATTTTGAAGAATAAGTCGCAGGAGATT
GAGCCCTATTTAAACGGACGCTGTATATATCTTGTTGGAATGATGGGCTCTGGAAAAACAACAGTGGGAAAGATTCTCTCGCAAGCAATTCATTATTCAT
TCTGTGACAGTGACACATTGGTGGAGAAGGATGTTGGTGTGACTTCTGTAGCTGAAATATTTCAAATATATGGAGAGGATTTCTTCAGAGATAAAGAGAC
TGAGGCATTAGAAAAGCTATCACTAGAGCACCGATATGTCGTTTCTACTGGTGGAGGTGCTGTGATACAGGATGAAAACTGGACGTACATGAGGAAGGGG
ATTAGTGTCTGGTTAGATGTGCCTTTGGAAGAATTGGCACAGAGGATTGCGGCTGTAGGAACCAAGACTCGCCCCCTTTTGGATAGAGAACCAGGAGATG
CATACACCAAGGCGTTCAGGCGTCTGTCTGCTCTGTTTGAACAGAGATATAAAGCTTATGAAAATGCTAATGCAAGGGTTTCTCTGGAAAATATTGCAGC
CAAATTAGGATATAAAGATGTATCCAATATCACACCACCTATGATTGCGATTGAGGCAATTGAACAAATTGGAAATATCCTGTAG
AA sequence
>Potri.005G084600.2 pacid=42803549 polypeptide=Potri.005G084600.2.p locus=Potri.005G084600 ID=Potri.005G084600.2.v4.1 annot-version=v4.1
MEANFAQRMQISTTWIDTGNLARKPTGFLRFSGRLKEQKRLQVFVSAQFRPVRDENRHRLASFEVSRSYNNSRVSTLESESLQDLLDDEALILKNKSQEI
EPYLNGRCIYLVGMMGSGKTTVGKILSQAIHYSFCDSDTLVEKDVGVTSVAEIFQIYGEDFFRDKETEALEKLSLEHRYVVSTGGGAVIQDENWTYMRKG
ISVWLDVPLEELAQRIAAVGTKTRPLLDREPGDAYTKAFRRLSALFEQRYKAYENANARVSLENIAAKLGYKDVSNITPPMIAIEAIEQIGNIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21940 ATSK1 shikimate kinase 1 (.1.2.3.4.5... Potri.005G084600
[exp]
0 1 SK2
AT1G23740 AOR alkenal/one oxidoreductase, Ox... Potri.008G161600
[exp]
4.69 0.8276
AT2G41760 unknown protein Potri.006G051500
[exp]
5.56 0.8835
AT2G05940 RIPK RPM1-induced protein kinase, P... Potri.003G066300
[exp]
6.63 0.8762
AT4G30420 nodulin MtN21 /EamA-like trans... Potri.006G177600
[exp]
8.12 0.8711
Potri.012G059801
[exp]
10.95 0.8459
AT1G13340 Regulator of Vps4 activity in ... Potri.010G127000
[exp]
15.49 0.8399
AT4G33950 ATOST1, P44, SR... SNF1-RELATED PROTEIN KINASE 2.... Potri.003G084100
[exp]
18.33 0.7717
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Potri.001G219200
[exp]
18.43 0.8293
AT2G44160 MTHFR2 methylenetetrahydrofolate redu... Potri.017G000300
[exp]
25.65 0.8508 Pt-MTHFR1.1,MTHFR2
AT3G07510 unknown protein Potri.002G239500
[exp]
29.73 0.8370

Potri.005G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.