Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GCN2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64840 983 / 0 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 912 / 0 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT1G64550 209 / 4e-58 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G60790 203 / 1e-56 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT3G54540 181 / 4e-48 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G03910 73 / 3e-13 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT1G27940 72 / 7e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 72 / 9e-13 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G25960 70 / 5e-12 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT4G33460 67 / 8e-12 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080600 [exp] 1158 / 0 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.004G214300 [exp] 203 / 1e-56 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 196 / 4e-54 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 195 / 4e-53 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.008G003300 [exp] 194 / 9e-53 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 191 / 8e-52 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.006G211700 [exp] 79 / 5e-15 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.006G123900 [exp] 74 / 3e-13 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.011G133800 [exp] 74 / 4e-13 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006804 [exp] 956 / 0 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 947 / 0 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10038681 [exp] 206 / 9e-58 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10028810 [exp] 204 / 4e-57 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 197 / 8e-54 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 199 / 3e-53 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10016184 [exp] 187 / 3e-50 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10037947 [exp] 186 / 6e-50 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10029363 [exp] 185 / 2e-49 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10017024 [exp] 79 / 6e-15 AT5G03910 712 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0023 [poplar] [flax] P-loop_NTPase PF12848 [poplar] [flax] ABC_tran_Xtn ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.005G084800.2 pacid=42805159 polypeptide=Potri.005G084800.2.p locus=Potri.005G084800 ID=Potri.005G084800.2.v4.1 annot-version=v4.1 ATGGACTTGTCCACTAAATTCCACTCTACCTTCTTCACCGGCGCAACCCTTTTCAATCCTCAACAAAAAACCTCACTTCTTAAACCGAACCCATCTCTCT TATCCACTAAATTCACTATAAACAACACTAATTCATTCAACTTCCCTACCAGAAGACCGAATTCTAAAATCAAAGCACGCTTATCAACGGCCACGGTAGA AACATCTGTTGCCGAACCCGAAACCGACATAGAGTCATTGTTTTCTAGCAATTCGGATGTTGATTTCGACAAGAACCGCTTAAGAAAGCAATCAAACCGT GGGGCTTCAGGGATATCTTCAGGTATTAAGCTAGAAAATATAAGCAAGAGTTATAAAGGTGTTACTGTTTTGAAAGACGTGACTTGGGAAGTGAAAAAGG GTGAGAAAGTTGGATTAGTTGGTGTAAATGGAGCAGGCAAAACGACCCAGTTGAGAATTATGACTGGGCTAGAGGAGCCTGATTCAGGAAATGTGATTAA AGCCAAAGCTAATATGAAGATTGCGTTCTTGAGTCAAGAGTTTGAAGTTTCTATGAGTAGGACTGTGAAGGAAGAGTTTATGAGTGCTTTTAAAGAGGAA ATGGAGATCGCTAAGAGATTGGAGAAGGTGCAAAAGGCTATAGAGGGATCTGTGGAGGATTTGGAGTTGATGGGGAGGTTATTGGATGAGTTTGATTTGT TGCAGAGAAGAGCACAAGCTGTGGACTTGGATGAAGTTGATGCAAAGATTAGTAAGTTGATGCCTCAGCTCGGTTTTTCCCCTGAGGATTCGGATAGGTT GGTGGCTGCTTTCAGTAGTGGGTGGCAGATGAGGATGTCGCTTGGGAAGATTTTGCTGCAGGACCCAGATTTGTTGCTTTTGGATGAACCCACAAATCAC CTTGACCTTGACACTATTGAGTGGCTTGAAGGTTATCTCCAGAAGCAAGATGTGCCGATGGTCATCATATCTCATGACAGAGCCTTTCTTGATCAATTGT GTACAAAAATTGTGGAAACTGATATGGGTGTGTCTAGGACATTTGAGGGAAATTATTCTCAATACATCATATCAAAAGCAGAATGGGTTGAAGCTCAGCT TGCTGCTTGGGAGAAGCATCAAAGGGAAATTGAGCACACGAGAGATTTAATAAGTAGGCTAGGTTCAGGAGCAAACTCTGGCCGTGCTTCTTCTGCTGAG AAGAAACTGGAGAGACTTCAAGAAGAGGATCAAATAGAGAAGCCATTTCAACGCAAACAAATGAAGATCAGGTTCCCAGAGCGTGGGAGAAGTGGAAGAT CTGTTGTTGCAATTAGGAATTTGGAATTTGGTTATGAGGATAAGGTGCTTTTTAATAAGACAAATCTCATGATAGAAAGAGGAGAAAAAATTGCTATTCT TGGTCCAAATGGATGTGGGAAGAGTACTTTACTGAAACTGATCATGGGTTTAGAGAAGCCAAGTAGAGGTGAAATTGTGCTTGGGGAACATAATGTACTA CCAAATTATTTTGAGCAGAACCAGGCTGAGGCACTTGATTTAGATAAAACAGTACTTCAAACAGTGGAAGAAGTTGCGGAGGACTGGAGACTTGATGATA TAAAGGGACTCCTTGGTCGTTGTAACTTCAAAGTGGATATGCTTGATAGAAAGGTTTCACTTTTGAGTGGTGGAGAGAAGGCACGCCTAGCATTTTGCAA ATTCATGGTTAAACCTTCAACTTTATTAGTTCTGGATGAACCAACTAATCACTTGGATATACCTTCAAAAGAGATGCTTGAGGAGGCCATATCAGAATAC AAAGGTACAGTCATCACAGTTTCTCATGACCGGTATTTCATAAAGCAAATAGTTAATAGAGTAGTGGAAGTTAAAGACGGCAAGTTACAGGATTATGCAG GCGATTACAATTATTATCTGGAGAAAAATCTGGACGCAAGGGTGAGAGAGCTTGAACGCGAAGCGGAGCTTGAGGACAAGGCTCCCAAAGTAAAGGCCAA ATCCAAGATGTCGAAGGCTGAGAAGGAAGCTCGGAAGAAACAAAAAATGCAGACCTTTCAGGCTGCCAAACAAAAGTCAAAAGGGTTGAAGAATTCAAAG AGATGGAATTGA
AA sequence Show only first row Show all	>Potri.005G084800.2 pacid=42805159 polypeptide=Potri.005G084800.2.p locus=Potri.005G084800 ID=Potri.005G084800.2.v4.1 annot-version=v4.1 MDLSTKFHSTFFTGATLFNPQQKTSLLKPNPSLLSTKFTINNTNSFNFPTRRPNSKIKARLSTATVETSVAEPETDIESLFSSNSDVDFDKNRLRKQSNR GASGISSGIKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIMTGLEEPDSGNVIKAKANMKIAFLSQEFEVSMSRTVKEEFMSAFKEE MEIAKRLEKVQKAIEGSVEDLELMGRLLDEFDLLQRRAQAVDLDEVDAKISKLMPQLGFSPEDSDRLVAAFSSGWQMRMSLGKILLQDPDLLLLDEPTNH LDLDTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLAAWEKHQREIEHTRDLISRLGSGANSGRASSAE KKLERLQEEDQIEKPFQRKQMKIRFPERGRSGRSVVAIRNLEFGYEDKVLFNKTNLMIERGEKIAILGPNGCGKSTLLKLIMGLEKPSRGEIVLGEHNVL PNYFEQNQAEALDLDKTVLQTVEEVAEDWRLDDIKGLLGRCNFKVDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY KGTVITVSHDRYFIKQIVNRVVEVKDGKLQDYAGDYNYYLEKNLDARVRELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQTFQAAKQKSKGLKNSK RWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	0	1	GCN2.2
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	1.00	0.9239
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	2.00	0.8934
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	4.58	0.8882
AT1G22180			Sec14p-like phosphatidylinosit...		Potri.013G068700 [exp]	6.78	0.8628
AT5G47740			Adenine nucleotide alpha hydro...		Potri.015G083100 [exp]	9.79	0.8561
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	10.58	0.8778
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	11.83	0.8666
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	14.28	0.8855
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	15.49	0.8706	COI1.2
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	16.73	0.8577

Compare expression of checked genes

Potri.005G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.