Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WRKY51.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64810 145 / 4e-44 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT5G26170 124 / 5e-36 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT1G29860 106 / 7e-28 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT2G47260 106 / 1e-27 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT1G64000 102 / 5e-27 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G46130 99 / 5e-27 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT2G21900 102 / 7e-27 WRKY ATWRKY59, WRKY59 WRKY DNA-binding protein 59 (.1) AT4G18170 103 / 1e-26 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G44745 101 / 1e-26 WRKY WRKY12 WRKY family transcription factor (.1) AT3G62340 102 / 2e-26 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079800 [exp] 257 / 4e-88 AT5G64810 140 / 3e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.006G224100 [exp] 120 / 1e-34 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.010G147700 [exp] 114 / 3e-30 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G103300 [exp] 110 / 6e-29 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G050000 [exp] 106 / 3e-28 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.002G193000 [exp] 107 / 5e-28 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.015G099200 [exp] 103 / 9e-28 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.014G118200 [exp] 106 / 1e-27 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.002G059100 [exp] 106 / 1e-27 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036624 [exp] 130 / 8e-38 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10035841 [exp] 126 / 5e-36 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10006848 [exp] 114 / 5e-31 AT5G26170 133 / 7e-39 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10017067 [exp] 110 / 1e-28 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 109 / 2e-28 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 107 / 5e-28 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10036401 [exp] 103 / 4e-27 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10004612 [exp] 104 / 8e-27 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10015377 [exp] 105 / 3e-26 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10007906 [exp] 101 / 3e-26 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G085200.1 pacid=42804871 polypeptide=Potri.005G085200.1.p locus=Potri.005G085200 ID=Potri.005G085200.1.v4.1 annot-version=v4.1 ATGTCCCTCCCTCTCAGTACTACTTGTCAACCCCCCCTCTTGTACGCAATGAACTTCCCTGAGATTAACCCTAACCATGATTTCTCTTATTTCAATGAAG GTTTCGACCCGCCGGCGACTGAGTTTCAGGTGTCAGATTACCTCATGCTTGATGATGGATTTGGTGAAGATAATTCATCCTCACAAAGTATGGCATCATC GGAGCAAGTTCCAAGTGGTTCATCAAGCGGATATAGTGGTGCAACATCGAGAAATAATAGCATAAAATGCAAGAATGGAGTGAAGAAAAATAAGATAGAA GGGGGGCATAGAGTTGCGTTTAGAACAAAATCAGAGCTGGAGGTGATGGATGATGGATTTAAATGGAGGAAGTATGGAAAGAAGTCAGTCAAGAACAGCC CACACCCAAGGAATTACTACAAATGTTCTAGTGGCGGATGCGATGTAAAGAAGAGAGTAGAGAGGGACGGAGAAGACTCGGCTTATGTGATAACTACATA CGATGGAGTGCACAACCATGAAAGCCCTTGCATGGTGTATTATAATAACCAGATTCCTCTCGCGGTCCCTAATGCTTGGACCTTCCAGGATTCTTCTCCT CACTCTTCTTCCTCTTCCTAG
AA sequence Show only first row Show all	>Potri.005G085200.1 pacid=42804871 polypeptide=Potri.005G085200.1.p locus=Potri.005G085200 ID=Potri.005G085200.1.v4.1 annot-version=v4.1 MSLPLSTTCQPPLLYAMNFPEINPNHDFSYFNEGFDPPATEFQVSDYLMLDDGFGEDNSSSQSMASSEQVPSGSSSGYSGATSRNNSIKCKNGVKKNKIE GGHRVAFRTKSELEVMDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCDVKKRVERDGEDSAYVITTYDGVHNHESPCMVYYNNQIPLAVPNAWTFQDSSP HSSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	0	1	WRKY51.1
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	2.44	0.8749	AMYVM1.2
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	4.00	0.8821
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	4.47	0.8808
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G090300 [exp]	5.74	0.8388	Pt-WRKY54.1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	7.93	0.8636
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.010G069800 [exp]	8.54	0.7682
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	9.38	0.8620
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	9.48	0.8648
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G027600 [exp]	9.79	0.8316
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G137900 [exp]	12.00	0.8381

Compare expression of checked genes

Potri.005G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.