Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09720 292 / 2e-101 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT1G22740 291 / 6e-101 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT2G21880 273 / 1e-93 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT1G49300 265 / 1e-90 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT3G18820 264 / 2e-90 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G52280 263 / 3e-90 AtRABG3d RAB GTPase homolog G3D (.1) AT3G16100 263 / 8e-90 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT5G39620 201 / 2e-65 AtRABG1 RAB GTPase homolog G1 (.1) AT5G10260 127 / 8e-37 AtRABH1e RAB GTPase homolog H1E (.1) AT2G33870 128 / 9e-37 ArRABA1h RAB GTPase homolog A1H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062400 [exp] 318 / 1e-111 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G198800 [exp] 308 / 7e-108 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4) Potri.004G153400 [exp] 269 / 2e-92 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.009G115000 [exp] 269 / 2e-92 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.007G079700 [exp] 268 / 4e-92 AT4G09720 272 / 3e-94 RAB GTPase homolog G3A (.1.2.3.4) Potri.001G182900 [exp] 246 / 4e-83 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.003G053400 [exp] 246 / 4e-83 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.014G049400 [exp] 128 / 7e-37 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 125 / 8e-36 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028719 [exp] 286 / 5e-99 AT4G09720 341 / 5e-121 RAB GTPase homolog G3A (.1.2.3.4) Lus10006059 [exp] 271 / 4e-93 AT4G09720 323 / 4e-114 RAB GTPase homolog G3A (.1.2.3.4) Lus10040468 [exp] 266 / 5e-91 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10035872 [exp] 265 / 1e-90 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10042328 [exp] 234 / 1e-78 AT3G18820 367 / 3e-131 RAB GTPase homolog G3F (.1) Lus10023582 [exp] 231 / 1e-77 AT3G18820 330 / 4e-117 RAB GTPase homolog G3F (.1) Lus10025790 [exp] 142 / 2e-42 AT1G52280 257 / 5e-88 RAB GTPase homolog G3D (.1) Lus10015297 [exp] 126 / 5e-36 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 125 / 2e-35 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 124 / 2e-35 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.005G085300.4 pacid=42803886 polypeptide=Potri.005G085300.4.p locus=Potri.005G085300 ID=Potri.005G085300.4.v4.1 annot-version=v4.1 ATGGACATGTCTCGAAGAGCATTACTGAAGGTTATCGTTCTGGGCGATATCGGGGTGGGAAAGACTTCTTTGATGAATCAATATGTATATAAGAAGTTTA GCCAGCAGTATAAATCTACAATTGGTGCTGATTTTGTCACCAAGGAACTACAGATTGATGACAAACTGGTGACTTTGCAAATATGGGACACGGCGGGGCA GGAGAGGTTTCAGAGTTTAGGATCAGCGTTTTACAGAGGGGCAGATTGCTGTGTTCTTGTATATGATGTAAATATACAGAAATCATTTGAAACACTTAAT AATTGGCATGAAGAATTTGTCAAACAGCAGGCGGCGGATCCAGCCGATCCTGGTGCATTCCCTTTTATATTATTTGGGAACAAAATCGACGTAGATGGTG GAAGCAGCCGAGTGGTTTCGGAGAAAAAGGCCAGAGAATGGTGTGCTTCCAGGGGAGATATACCATACTTTGAGACCTCAGCAAAAGAAGGTTACAATGT TCATGAAGCATTTCTTTGTGTTGCAAAAATGGCACTAGAAGGTGAACATGAACATGAACAGGAACATGAACAGGAACATGACATTTACTTTCAGGGTATA TCAGAAACTGTTTCAGAAGTCGAGCAAAGGGGAGGCTGTGCGTGTTGA
AA sequence Show only first row Show all	>Potri.005G085300.4 pacid=42803886 polypeptide=Potri.005G085300.4.p locus=Potri.005G085300 ID=Potri.005G085300.4.v4.1 annot-version=v4.1 MDMSRRALLKVIVLGDIGVGKTSLMNQYVYKKFSQQYKSTIGADFVTKELQIDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNIQKSFETLN NWHEEFVKQQAADPADPGAFPFILFGNKIDVDGGSSRVVSEKKAREWCASRGDIPYFETSAKEGYNVHEAFLCVAKMALEGEHEHEQEHEQEHDIYFQGI SETVSEVEQRGGCAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.005G085300 [exp]	0	1
AT5G47610			RING/U-box superfamily protein...		Potri.011G147900 [exp]	12.00	0.8705
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152600 [exp]	12.00	0.9030
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	18.49	0.8757
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	20.42	0.8966
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	23.32	0.8758	DFL2.1,GH3-11
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	28.35	0.8916
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G099900 [exp]	30.16	0.8585	DREB56
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G095700 [exp]	31.55	0.8819
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	32.84	0.8732
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	36.19	0.8825

Compare expression of checked genes

Potri.005G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.