Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10500 227 / 1e-76 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT2G16710 77 / 3e-18 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT5G03905 76 / 2e-17 Iron-sulphur cluster biosynthesis family protein (.1) AT2G36260 72 / 2e-16 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079600 [exp] 232 / 6e-79 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.006G084300 [exp] 76 / 9e-18 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1) Potri.010G238800 [exp] 76 / 1e-17 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.008G020400 [exp] 73 / 1e-16 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012683 [exp] 213 / 6e-71 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10020827 [exp] 211 / 1e-70 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10022714 [exp] 71 / 7e-16 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1) Lus10014201 [exp] 71 / 9e-16 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10017048 [exp] 66 / 1e-13 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10021368 [exp] 58 / 3e-10 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [poplar] [flax] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Potri.005G085400.1 pacid=42802385 polypeptide=Potri.005G085400.1.p locus=Potri.005G085400 ID=Potri.005G085400.1.v4.1 annot-version=v4.1 ATGGCGTTTTTCTCTTCGACAGCAGCACCACCGCACTCTCCTCTTCTTCCATCGCCAAATTACACTAGTACAAAAACTCTCTCTTTCTCTTCACCTCCAA ATTCCCTCTCTTTCCGATTCTCGAAATCAAATTTCAGCCGTCGAAACCATCCTCTCTCCCTTCGATCAACTTCATCTCCAGCTGCGCCGCCGTCGGAGGG GGTGGCGCCGGCGATATCCGTGACGGAGAATGCGTTGAAGCATTTGAATAGGATTAAAAATGATAGAGATGAAGATCTGTGCTTAAGAATTGGGGTCAAA CAAGGTGGATGCTCTGGCATGTCTTACACCATGGATTTTGAAAATCGAGCCAATGCTAGACCTGATGATTCCATCATTGAATACAACGGATTTGCAATTG TTTGTGATCCAAAGAGCCTCCTCTTCCTATTTGGGATGCAATTGGATTATAGCGATGCTCTTATTGGTGGAGGTTTCTCTTTCAAGAACCCAAATGCAAC AAAGACATGTGGTTGTGGTAAATCCTTTGCAGCATAG
AA sequence Show only first row Show all	>Potri.005G085400.1 pacid=42802385 polypeptide=Potri.005G085400.1.p locus=Potri.005G085400 ID=Potri.005G085400.1.v4.1 annot-version=v4.1 MAFFSSTAAPPHSPLLPSPNYTSTKTLSFSSPPNSLSFRFSKSNFSRRNHPLSLRSTSSPAAPPSEGVAPAISVTENALKHLNRIKNDRDEDLCLRIGVK QGGCSGMSYTMDFENRANARPDDSIIEYNGFAIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATKTCGCGKSFAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	0	1
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	1.41	0.9761
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	3.46	0.9757
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	4.47	0.9731
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	4.89	0.9744
AT5G07020			proline-rich family protein (....		Potri.001G032200 [exp]	7.54	0.9662
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	7.74	0.9632
AT2G35260			unknown protein		Potri.001G143400 [exp]	8.66	0.9670
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	8.71	0.9740
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	9.16	0.9706
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	9.94	0.9694

Compare expression of checked genes

Potri.005G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.