Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21870 322 / 2e-112 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079500 [exp] 431 / 2e-155 AT2G21870 343 / 1e-120 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012682 [exp] 346 / 1e-121 AT2G21870 320 / 1e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Lus10005794 [exp] 337 / 6e-118 AT2G21870 320 / 2e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Lus10006806 [exp] 312 / 1e-98 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15704 [poplar] [flax] Mt_ATP_synt Mitochondrial ATP synthase subunit
Representative CDS sequence Show only first row Show all	>Potri.005G085500.2 pacid=42803606 polypeptide=Potri.005G085500.2.p locus=Potri.005G085500 ID=Potri.005G085500.2.v4.1 annot-version=v4.1 ATGGCTTTCAGTTATCGCCTCTTATCCAGATCCAAACAGTTGTATGGAAGTCAAGCCATTTTGAATCAGCAACTTGCTTTTCCAGTTCGTTATTATGCAA AAGAGGCGGCTCCCGATGGGTTCAAGGGAGATGAGATGTTGAAGGACATCTTTCGTGACCTCAAGAAGAAATTTGATACAGCCATTGGGGTTTTTCGGAA AGAAAAGATCATCATTGATCCCGAGGATCCAGCTGCTGTGTCTCATTATGCAAAGGTCATGAAGACAGCTAGAGAGAAGGCTGGCTTGTTATCGGAATCT CAAAGGATCCAGTATACTATCGAAGAAGAAACAAAAGATATTCCAGATGCTCGAACATATTTTTTGCAATTGCAGGAAATAAGAATCAAAAGAGATCTCC CTGATGAGCTTGGTGTAGAGGCTATGATGATGGATGCATTGGAAAAAGTTGAAAAGGAAATTAAGAAACCTCTGATGAGGAATGATAAGAAAGGAATGGC TCTTCTTATGGCTGAATTTGATAAGATTAATACAAAGTTTGGAGTTCGGAGGGAAGATCTGCCAAAATATGAAGAGGAGTTGGAACTTAAAATCGCCAAA GCACAATTGGAGGAGCTGAAGAAGGATGCTGTTGAGGCTATGGAAACACAAAGGAAGAGGGAGGAATTTAAGAATGAGAAAGCGGTTGATGTGAGGTCTT TGGACATCCGGAACTTTCTCTGA
AA sequence Show only first row Show all	>Potri.005G085500.2 pacid=42803606 polypeptide=Potri.005G085500.2.p locus=Potri.005G085500 ID=Potri.005G085500.2.v4.1 annot-version=v4.1 MAFSYRLLSRSKQLYGSQAILNQQLAFPVRYYAKEAAPDGFKGDEMLKDIFRDLKKKFDTAIGVFRKEKIIIDPEDPAAVSHYAKVMKTAREKAGLLSES QRIQYTIEEETKDIPDARTYFLQLQEIRIKRDLPDELGVEAMMMDALEKVEKEIKKPLMRNDKKGMALLMAEFDKINTKFGVRREDLPKYEEELELKIAK AQLEELKKDAVEAMETQRKREEFKNEKAVDVRSLDIRNFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.005G085500 [exp]	0	1
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.012G056900 [exp]	1.73	0.9451
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	2.00	0.9367
AT1G15370			SNARE-like superfamily protein...		Potri.001G193100 [exp]	2.64	0.9314
AT5G15320			unknown protein		Potri.002G024900 [exp]	4.69	0.9439
AT2G32580			Protein of unknown function (D...		Potri.014G155600 [exp]	5.74	0.9373
AT2G19790			SNARE-like superfamily protein...		Potri.006G149100 [exp]	7.34	0.9122
AT5G35080			unknown protein		Potri.018G118200 [exp]	7.74	0.9154
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	9.38	0.9235
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	9.38	0.9294
AT5G63620			GroES-like zinc-binding alcoho...		Potri.004G138700 [exp]	10.24	0.8847

Compare expression of checked genes

Potri.005G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.