Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39470 296 / 9e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18420 145 / 2e-40 Protein prenylyltransferase superfamily protein (.1) AT3G53560 138 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 135 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 124 / 1e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 100 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78915 46 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079200 [exp] 565 / 0 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098500 [exp] 145 / 2e-40 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.008G143600 [exp] 144 / 8e-40 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.016G080000 [exp] 138 / 1e-37 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 132 / 9e-36 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G142980 [exp] 110 / 4e-29 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.016G081200 [exp] 69 / 1e-14 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035707 [exp] 282 / 1e-93 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024433 [exp] 125 / 5e-33 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 124 / 3e-32 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031923 [exp] 119 / 1e-30 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035087 [exp] 77 / 8e-17 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1) Lus10034802 [exp] 42 / 0.001 AT1G78915 440 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF14559 [poplar] [flax] TPR_19 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.005G085700.1 pacid=42804068 polypeptide=Potri.005G085700.1.p locus=Potri.005G085700 ID=Potri.005G085700.1.v4.1 annot-version=v4.1 ATGGGTTCAATTAAAACATTCTCTGCTTACCCTCCATCATCACAATTTCAGAATTTGAAATTGTCAAAAGATTGCTTCTTCTTCAATCCACTAAAACCCC CACTATGTTCCTTCAATCCACTCAACATCCACAACAGGCACAGACTACGCATATCCTCAAAACACTCTTGTATGTCACCCTTTCCTCAAATACTCACTTC TAGTCTCTCCAAGACAAACTACAAATTCACCAATTTTTTGTCCGAGAAGGTTTTGGTTTCCCTTGTTGGGGCATTCATTTTTATTGGTTCTTTTGGTTTA AATACTAGGCAAAGTTTGGCGCTTCCTGCTCAAACAACTGGTCCTAGTGTGAATTTAGAGGAAAAGAGAGATGCCCATATGGAGAAAAGTGAGGATGAGG AGATGTTTGAGAAGGTTTTGGAGATGGAGCCAAGGAATGTGGAGGCATTGAAGGTCGTTGTGCATGGGAAAATGAGGAGAGGACAGACTAAAGAGGCTGT GAAGTATGTCGAGAGGTTGATTGATATTGAGCCTGAGCAAGTTGAATGGAGGCTTTTGGAGGCACTTTGTTATGAGATGATGGGTCAGTTGAGTAAGGCT AAAACGTTGTTCAAGGAAATCTTGATAGAGAGACCTCTTTTGCTTAGAGCTTTGCACGGTCTGGCATTGGTGATGCACAAAAGTCTTGAAGGTCCAGCTG TCTTTGAGATGCTGAATAAAGCTCTGGAAGTTGCCCGTCGTGAAAAAAGAGTCACTGAGGAGAGAAACATTAGAATTCTAATTGCACAAATGCTTGTTGT CAAGGGGGAATTGGAGGAAGCTTTGAAGAAATTTCAAGGTCTGGTTAGTGACAACCCACGAGATTTTCGGCCTTATCTTTGCCAGGGAATAATATACAGT CTGTTGGGTAGAAAAGAAGCAGCTGCGGAACATTTTGAAACGTATCAGAGCCTTGTGCCAGATGAATTTCCACAAAGGATGTTTCTTGATGATGTTGTAT TGGAAGCGAAAACCAAGTCCCGGGAATGGTTTCAGGAGGAGTGTCAAGCTGAATCCTCATACAAGAAATAA
AA sequence Show only first row Show all	>Potri.005G085700.1 pacid=42804068 polypeptide=Potri.005G085700.1.p locus=Potri.005G085700 ID=Potri.005G085700.1.v4.1 annot-version=v4.1 MGSIKTFSAYPPSSQFQNLKLSKDCFFFNPLKPPLCSFNPLNIHNRHRLRISSKHSCMSPFPQILTSSLSKTNYKFTNFLSEKVLVSLVGAFIFIGSFGL NTRQSLALPAQTTGPSVNLEEKRDAHMEKSEDEEMFEKVLEMEPRNVEALKVVVHGKMRRGQTKEAVKYVERLIDIEPEQVEWRLLEALCYEMMGQLSKA KTLFKEILIERPLLLRALHGLALVMHKSLEGPAVFEMLNKALEVARREKRVTEERNIRILIAQMLVVKGELEEALKKFQGLVSDNPRDFRPYLCQGIIYS LLGRKEAAAEHFETYQSLVPDEFPQRMFLDDVVLEAKTKSREWFQEECQAESSYKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.005G085700 [exp]	0	1
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	3.87	0.8838
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	4.00	0.8801
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.012G141700 [exp]	10.48	0.8286
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	13.49	0.8268
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	19.05	0.8690
AT5G62950			RNA polymerase II, Rpb4, core ...		Potri.005G067600 [exp]	19.59	0.8282
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	23.91	0.8572
AT2G44020			Mitochondrial transcription te...		Potri.013G116700 [exp]	48.98	0.8159
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	59.32	0.8215
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	61.96	0.7831

Compare expression of checked genes

Potri.005G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.