Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21860 700 / 0 violaxanthin de-epoxidase-related (.1) AT1G08550 58 / 9e-09 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053100 [exp] 63 / 2e-10 AT1G08550 585 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032756 [exp] 724 / 0 AT2G21860 699 / 0.0 violaxanthin de-epoxidase-related (.1) Lus10002789 [exp] 419 / 7e-144 AT2G21860 393 / 2e-134 violaxanthin de-epoxidase-related (.1) Lus10021986 [exp] 62 / 5e-10 AT1G08550 595 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10042524 [exp] 61 / 1e-09 AT1G08550 592 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G085800.1 pacid=42805129 polypeptide=Potri.005G085800.1.p locus=Potri.005G085800 ID=Potri.005G085800.1.v4.1 annot-version=v4.1 ATGTCTCTAGAAACAACCCCTCTCTTCCATTTGAAAACTGGTCTCCAACCTAGCCGCCGGTTCATTCCCTCCATTCCCGGTCTATCATCGGCTCACCACC ACCGGATTCCACTTCATTTCCAGGTTTCTCAGTCTTTTCGCGCTAAAAAAACAATTAAGCCCACAGAAACTAAAATTCCCGCGGTTTTGGAGCACGGAAC TGCGGTGACTGAGAAGCAACCTGACCCGCCAGTGAGAATAGTCACCATTGTTGGCGCAGGAAGCATCAGCCCTTTAAAACGCACTCCTTGGGAAGAGGTC ATGCTCCATACTGCAAAAAGATTGAAGTGGGTTGATGAAGGATATGATATGCTGGTGTTTACTGATGACTTGTATCAATCCAAGGATCAAACCGAGATTC TACTAAAGGCATTGAGCTGTGCAGATATATTGCTGATAGTGGCAGTTACGGATCAAGAATCAGTCAAGTGGATTGAAACCGAAAGCAAAAATGTTCCAAA CATTGTATGCTTTGACTCATCTCCGAATCTAGTGAACAAATTAGGAGGATCTTATGTTCAGAATGAGACCAGTGGGACCTTATTTGCAAAAACATTTGGA ATTTCACCATCGAAGAAAGCCAGTGATTCTATGGATGTAGTGCAGACTGTATCAGACGCATGGAAGCGACATAATTCGGATGACATCAGGTTCTGCTTGT TGATAATAATCAATGCTTATATAAGACCTGTACCAATCCTAAAGAACCTGAGATCAAAAGGGTTTTCCACCTTGAACTGCATGGTCAAGAATTGTGGGCC TCAGATATTAAATTGTCTATTGGATCCTGACTGCAGGAAAGCTCTTCAATGCTTGAACAAATGCAGCCCAGTCGATCAGGTGTGTAATTATAGATGTATT GCTTCTTACGAAAGTCCAAACCTGGAAGCATTTTCTCTTTGTGTGCTGCAGAAGAACAATTGTCTTGAATTGGATGCGAAGATCCCTGAAAAACCTTTTG TGCCTCCCATGGCCAGGTTTCGAGGGGAGGACTTAAGTCATGAAACTGCAGAGGATCTTTTTGTGGGTTGGTTGGGGAGTCTGGACTGGAGTTGGCGGGT AATTGCAGGACAGAACCCGGCTTATGATCAATTTCCATGCCAGTACCAGTTGTTCTACAGAGGAAAGGCGAAAGGTTCATTTTGGTACGAGCCAGTTTTC CAAGTTAAAACTCTAGAGGGTAAGGTAGTTTGGAGGAGAAGGAAGTATCGTGTCAAAAGAGGCAAAATTCCTGGAACATTTTACTTCAGTGTATTGGACA ATGGTGTTGTTTCCAATGAGTGTTGGACGATTGTGGACGTCTCTGATGATTTTAGTTGGGGTCTGTTTCATTACAATGGGGCTGCTCGAGTTGCAGGACA GGCATATACAGGAGCAGTGCTTGTTAGTCCAGATGGAGCCTACCCAGATGAAAAGGAGAGCAAGAGACTTGCTTCTGCCTTGGAAAAATGTGGAATAAAA GAATGGGAGCTATTTACAGTTGACAATTGTTCATGCCAAGATCCTCCGCTAGGACTTCCAGAGGGCTCAAGTTTGCATTCTGCAATTGATGTTAAAGACC AGAAATGGACCTCCACATAG
AA sequence Show only first row Show all	>Potri.005G085800.1 pacid=42805129 polypeptide=Potri.005G085800.1.p locus=Potri.005G085800 ID=Potri.005G085800.1.v4.1 annot-version=v4.1 MSLETTPLFHLKTGLQPSRRFIPSIPGLSSAHHHRIPLHFQVSQSFRAKKTIKPTETKIPAVLEHGTAVTEKQPDPPVRIVTIVGAGSISPLKRTPWEEV MLHTAKRLKWVDEGYDMLVFTDDLYQSKDQTEILLKALSCADILLIVAVTDQESVKWIETESKNVPNIVCFDSSPNLVNKLGGSYVQNETSGTLFAKTFG ISPSKKASDSMDVVQTVSDAWKRHNSDDIRFCLLIIINAYIRPVPILKNLRSKGFSTLNCMVKNCGPQILNCLLDPDCRKALQCLNKCSPVDQVCNYRCI ASYESPNLEAFSLCVLQKNNCLELDAKIPEKPFVPPMARFRGEDLSHETAEDLFVGWLGSLDWSWRVIAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVF QVKTLEGKVVWRRRKYRVKRGKIPGTFYFSVLDNGVVSNECWTIVDVSDDFSWGLFHYNGAARVAGQAYTGAVLVSPDGAYPDEKESKRLASALEKCGIK EWELFTVDNCSCQDPPLGLPEGSSLHSAIDVKDQKWTST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21860			violaxanthin de-epoxidase-rela...		Potri.005G085800 [exp]	0	1
AT3G61770			Acid phosphatase/vanadium-depe...		Potri.002G171300 [exp]	4.69	0.8543
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	6.24	0.8574
AT1G32260			unknown protein		Potri.003G095600 [exp]	7.74	0.8485
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.003G164600 [exp]	11.53	0.8053
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.010G248401 [exp]	13.26	0.7921
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	18.11	0.8324
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	18.65	0.8072
					Potri.001G371500 [exp]	21.90	0.8013
AT1G06230		GTE4	global transcription factor gr...		Potri.011G096400 [exp]	22.58	0.7074
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.010G237100 [exp]	24.45	0.7809

Compare expression of checked genes

Potri.005G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.