Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39460 486 / 1e-174 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G34065 429 / 8e-152 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 145 / 6e-39 Mitochondrial substrate carrier family protein (.1) AT1G74240 139 / 3e-38 Mitochondrial substrate carrier family protein (.1) AT5G42130 133 / 1e-35 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT2G26360 122 / 7e-32 Mitochondrial substrate carrier family protein (.1) AT2G35800 123 / 5e-31 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G30160 113 / 8e-29 Mitochondrial substrate carrier family protein (.1) AT1G07030 110 / 6e-28 Mitochondrial substrate carrier family protein (.1) AT4G32400 103 / 9e-25 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197200 [exp] 431 / 1e-152 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 148 / 6e-40 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 136 / 6e-37 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 135 / 5e-35 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.008G043700 [exp] 135 / 5e-35 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 124 / 9e-33 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 121 / 8e-32 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 120 / 1e-31 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 119 / 3e-31 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005787 [exp] 479 / 2e-171 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 468 / 8e-167 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 132 / 3e-35 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 129 / 7e-33 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 129 / 8e-33 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 119 / 8e-31 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 118 / 2e-30 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 117 / 5e-30 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 96 / 2e-22 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 96 / 3e-22 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.005G085900.1 pacid=42805161 polypeptide=Potri.005G085900.1.p locus=Potri.005G085900 ID=Potri.005G085900.1.v4.1 annot-version=v4.1 ATGGGTCCTTTAACATTAGCTGTTGACACAAAAACCTCTTCAAAACCCCATTTAGATGCACCTATTTTGAAAATGCAAAAAACAAAGCCTTTTGCATCAA TCAATGCTCAAGAAGATAGCCCATTTGATTTCTTGCGTATTTTATTCGAGGGAGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACTGCATTGTA TCCTATTGATACCATAAAGACAAGACTTCAGGCGGCTCGTGGTGGTGGAAAAATAATGTTAAAGGGTCTTTATTCTGGATTGGCTGGAAATCTAGCTGGT GTCTTACCAGCTTCTGCATTATTTGTTGGAGTATATGAGCCTACCAAGCAGAAATTGTTGAAGACTTTTCCTGAAAATCTTAGTGCTGTAGCTCATCTGA CTGCGGGTGCTGTGGGAGGGATTGCTGCTTCTCTCATTCGTGTTCCAACAGAGGTCGTTAAGCAAAGGATGCAGACTGGCCAATTCACCTCAGCCCCCGA TGCTGTCCGTCTTATTGTCTCTAAGGAAGGTTTTAAGGGTTTTTATGCGGGATATGGATCTTTTTTGCTGCGTGATTTGCCATTTGATGCAATTCAATTC TGCATCTATGAGCAGCTACGGATTGGTTATAGAGTGGCCGCACAAAGAGAGTTGAATGATCCTGAGAATGCTGCGATTGGTGCTTTTGCTGGTGCACTAA CTGGAGCCATAACCACCCCCCTCGATGTGATCAAGACAAGGTTAATGGTTCAGGGATCAGCTAACCAGTACAAAGGCATCGTTGACTGTGTTTCTACTGT TGTTAGGGAAGAAGGACCTACTGCTCTCCTAAAGGGTATAGGGCCGAGAGTGCTGTGGATAGGCATCGGTGGCTCGATCTTCTTTGGTGTCCTGGAACGC ACAAAGCGGTTACTTGCTCAGAGGCGTCCTATATCTGATCAACAGCCAAACCCAAAGCAGGATTGA
AA sequence Show only first row Show all	>Potri.005G085900.1 pacid=42805161 polypeptide=Potri.005G085900.1.p locus=Potri.005G085900 ID=Potri.005G085900.1.v4.1 annot-version=v4.1 MGPLTLAVDTKTSSKPHLDAPILKMQKTKPFASINAQEDSPFDFLRILFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGGKIMLKGLYSGLAGNLAG VLPASALFVGVYEPTKQKLLKTFPENLSAVAHLTAGAVGGIAASLIRVPTEVVKQRMQTGQFTSAPDAVRLIVSKEGFKGFYAGYGSFLLRDLPFDAIQF CIYEQLRIGYRVAAQRELNDPENAAIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVSTVVREEGPTALLKGIGPRVLWIGIGGSIFFGVLER TKRLLAQRRPISDQQPNPKQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G085900 [exp]	0	1
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Potri.001G416400 [exp]	4.47	0.9686
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Potri.014G141200 [exp]	7.74	0.9643
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	9.38	0.9662	Pt-SIGB.2
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	11.48	0.9656
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	14.66	0.9642	RNP1.2
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Potri.009G122300 [exp]	15.65	0.9503
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Potri.014G166800 [exp]	17.74	0.9440	APG1.2
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	20.19	0.9607
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	25.69	0.9590
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	26.03	0.9629

Compare expression of checked genes

Potri.005G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.