Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BRI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1397 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 875 / 0 BRL1 BRI1 like (.1.2) AT3G13380 872 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 809 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G02220 442 / 3e-137 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G74360 436 / 4e-134 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 431 / 1e-130 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 418 / 3e-128 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G72300 419 / 8e-128 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 416 / 2e-127 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078100 [exp] 1911 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 919 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 909 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 827 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 812 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 503 / 4e-157 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 489 / 7e-152 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G116900 [exp] 453 / 8e-141 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 452 / 2e-140 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033533 [exp] 1514 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 1494 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 1338 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 1337 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 819 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 808 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10009213 [exp] 447 / 3e-138 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 446 / 4e-138 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 427 / 7e-131 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10036251 [exp] 427 / 3e-129 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G086500.1 pacid=42805388 polypeptide=Potri.005G086500.1.p locus=Potri.005G086500 ID=Potri.005G086500.1.v4.1 annot-version=v4.1 ATGGAAGCCCACTTCTTTGTCTCGCTTCTCTCTCTTATTCTCCTCTCACTACCACCTTTTTTTACCTCAGCAAACAAAGACACCCAAAACCTTATCAACT TCAAGACAACTCTCTCTAACCCATCTCTCCTACAAAACTGGCTTCCTGACCAAAACCCATGTATCTTCACTGGAGTTAAATGCCAAGAAACCACTAACAG AGTCTCCTCTATAGACCTCACTAACATTTCTTTAACCTGTGATTTCCATCCTGTGGCCGCATTCCTTTTGACTCTTGAAAACTTAGAGAGCCTTTCTTTG AAATCAGCGAACATTTCTGGCACTATTTCTTTCCCTTTTGGATCTAAGTGCAGCTCAGTTTTGAGCAACTTAGATCTATCTCAGAATAGTCTCTCCGGTT CTGTCTCTGATATAGCCGCTTTACGCTCTTGTCCAGCCTTGAAATCCTTGGGCCTTTCTGGCAACTCCATTGAGTTTTCAGTGCCTAAAGAGAAATCAAG TGGGCTAAGAGGGCTCAGCTTTACGTTTATTGATCTTTCTTTCAATAAGATTGTAGGCTCAAACGTGGTGCCTTTCATTTTATCTGGAGGCTGCAATGAC TTGAAGTACTTGGCTTTGAAGGGAAATAAAGTGAGTGGAGATGTTGATTTTTCAAGTTGCAAGAATCTGCAGTATCTTGATGTCTCTTCAAACAATTTCT CTGTGACTGTTCCTTCATTTGGCGACTGCTTAGCTTTGGAGCACCTTGATATCTCTTCCAATAAGTTTTATGGTGATCTTGGTCGTGCAATTGGTGGTTG TGTTAAGCTCAACTTCTTGAATATTTCAAGCAACAAGTTTTCAGGTCCAATTCCAGTGTTTCCAACTGGGAATTTGCAGTCTCTTTCACTTGGCGGCAAC CATTTTGAGGGGGAGATTCCTCTACATCTCATGGATGCTTGCCCAGGTCTTGTTATGCTTGATCTTTCTTCAAATAATCTCTCTGGTTCTGTCCCTAATA GTTTTGGTTCCTGCACTTCATTGGAAAGTTTTGATATTTCTACCAACAACTTCACTGGTGAATTGCCTTTTGATACTTTCTTGAAAATGACTAGTCTGAA GAGGCTTGATTTGGCATATAATGCTTTTATGGGTGGCTTGCCTGATTCTTTATCACAGCATGCTAGTTTGGAGTCTTTAGATCTGAGTTCTAATAGTTTA TCTGGGCCAATCCCTGCTGGCTTGTGTCAAGTTCCAAGTAACAACTTCAAAGAGTTGTATCTTCAAAACAATAGGTTTACCGGGTCTATTCCTGCCACCC TCAGTAACTGCTCTCAACTTACAGCACTCCATTTGAGCTATAACTACCTCACTGGAACTATCCCTTCGAGCTTGGGAACGCTGAATAAGCTTCGCGATTT GAACCTTTGGTTCAACCAGCTCCATGGAGAAATCCCACTTGAGTTGATGAACATAAAAGCACTGGAGACTCTGATTCTAGACTTCAATGAGTTGACAGGA GTGATACCTTCAAGTATAAGCAACTGCACCAACCTTAACTGGATCTCATTGTCTAACAATCGATTAAGTGGTGAGATTCCAGCATCAATTGGCCAGCTTT GGAGCCTTGCAATTCTCAAACTGAGCAACAATTCGTTCCATGGTAGAGTCCCGCCAGAGCTTGGAGACAGTCGTAGCTTGATTTGGTTGGATCTTAATAC CAATTTTTTGAACGGAACAATCCCACCTGAGCTGTTCAAACAGTCTGGCAGTATTGCTGTGAATTTTATCAGAGGAAAGAGGTATGTGTATCTGAAGAAT GAAAAGAGTGAACAGTGTCACGGGGAGGGAGATTTGCTTGAATTTGCCGGAATAAGATCGGAACACCTGATTAGAATCTCCAGCAGGCACCCCTGCAACT TTACCAGAGTATATGGAGATTACACCCAACCCACATTCAATGATAATGGGTCAATGATCTTCCTTGATCTTTCTTACAACATGTTATCTGGCAGTATTCC AGCAGCGATTGGGAGTATGTCGTACCTCTATATCTTGAACTTGGGCCATAATAATCTCTCCGGAAACATTCCACAAGAGATTGGAAAGTTGACTGGTCTT GACATTCTCGACCTCTCCAACAATAGGCTCGAAGGGATGATTCCCCAGTCAATGACTGTCCTTTCATTGCTTTCAGAGATTGATATGTCCAACAATCACC TCACTGGAATTATTCCTGAAGGGGGCCAGTTTCAAACATTTTTAAATCGCAGTTTCCTCAACAATTCAGGCCTCTGTGGGATACCTCTTCCTCCATGTGG GTCGGGCTCAGCATCAAGCTCGAGTTCTGGGCATCACAAGTCTCATAGGAGACAGGCATCCCTGGCAGAGAGTGTGGCAATGGGATTGTTGTTCTCACTT TTCTGCTTCTTTGGTTTGATTATTGTTGCTCTGGAAATGAAGAAGCGGAAGAAAAAGAAAGAGGCAGCCCTTGATATCTATATAGACAGCCGCTCACACT CTGGCACCACAAATACTGCCTGGAAGCTGACGGCTCGTGAAGCATTAAGCATCAGTCTCGCCACATTTGATTCGAAGCCCCTGCGGAAGCTCACTTATGC AGATCTTCTTGAAGCAACGAATGGCTTCCACAATGACAGCCTCATAGGCTCTGGAGGTTTTGGTGACGTATACAAGGCAGAACTGAAAGATGGAAGCGTT GTAGCCATCAAGAAACTGATACATATCAGTGGACAGGGTGATAGAGAATTCACTGCTGAAATGGAGACCATTGGCAAAATCAAGCACGATAACCTTGTTC CACTCCTTGGTTACTGCAAGGTCAGAGAAGAGCGACTCTTGGTGTACGAGTACATGAAATATGGCAGTTTAGAAGACGTTCTACACAACCAAAAGAAAAC AGGGATCAAACTGAACTGGGCTGCAAGAAGGAAGATTGCCATTGGTGCCGCCAAAGGATTAACTTTTCTTCACCATAATTGCATCCCACTGATCATTCAC AGGGACATGAAATCTAGCAATGTCTTGCTTGATGCGAACTTGGAGGCCAGAGTCTCCGATTTCGGAATGGCAAGGCTTATGAGTACAATGGATACTCATT TGAGTGTTAGCACACTCGCAGGCACGCCTGGTTATGTTCCTCCCGAATACTACCAGAGCTTTAGGTGTTCCATCAAAGGGGATGTTTACAGTTATGGTGT AGTCTTGCTTGAGTTGCTGACAGGAAAAAGGCCAACAGATTCATCTGATTTTGGTGACAATAATCTTGTTGGGTGGGTGAAGCAGCATGCCAAATTGAGA ATAAGCGATGTCTTCGATCCGGTGCTTTTAAAAGAGGATCCGAGCCTTGAGATGGAGCTCCTAGAACATTTAAAGGTAGCTTGTGCTTGTTTAGATGATC GATCAGGTAGAAGACCCACAATGATTCAAGTAATGACGATGTTTAAAGAAATCCATGCAGGGTCAGGCCTTGACTCACAATCCACAATCGCCACTGAAGA TGGGGGTTTTAGTGCAGATGAAATGGTAGAGATGAGCATAAGAGAAGGCCCATAG
AA sequence Show only first row Show all	>Potri.005G086500.1 pacid=42805388 polypeptide=Potri.005G086500.1.p locus=Potri.005G086500 ID=Potri.005G086500.1.v4.1 annot-version=v4.1 MEAHFFVSLLSLILLSLPPFFTSANKDTQNLINFKTTLSNPSLLQNWLPDQNPCIFTGVKCQETTNRVSSIDLTNISLTCDFHPVAAFLLTLENLESLSL KSANISGTISFPFGSKCSSVLSNLDLSQNSLSGSVSDIAALRSCPALKSLGLSGNSIEFSVPKEKSSGLRGLSFTFIDLSFNKIVGSNVVPFILSGGCND LKYLALKGNKVSGDVDFSSCKNLQYLDVSSNNFSVTVPSFGDCLALEHLDISSNKFYGDLGRAIGGCVKLNFLNISSNKFSGPIPVFPTGNLQSLSLGGN HFEGEIPLHLMDACPGLVMLDLSSNNLSGSVPNSFGSCTSLESFDISTNNFTGELPFDTFLKMTSLKRLDLAYNAFMGGLPDSLSQHASLESLDLSSNSL SGPIPAGLCQVPSNNFKELYLQNNRFTGSIPATLSNCSQLTALHLSYNYLTGTIPSSLGTLNKLRDLNLWFNQLHGEIPLELMNIKALETLILDFNELTG VIPSSISNCTNLNWISLSNNRLSGEIPASIGQLWSLAILKLSNNSFHGRVPPELGDSRSLIWLDLNTNFLNGTIPPELFKQSGSIAVNFIRGKRYVYLKN EKSEQCHGEGDLLEFAGIRSEHLIRISSRHPCNFTRVYGDYTQPTFNDNGSMIFLDLSYNMLSGSIPAAIGSMSYLYILNLGHNNLSGNIPQEIGKLTGL DILDLSNNRLEGMIPQSMTVLSLLSEIDMSNNHLTGIIPEGGQFQTFLNRSFLNNSGLCGIPLPPCGSGSASSSSSGHHKSHRRQASLAESVAMGLLFSL FCFFGLIIVALEMKKRKKKKEAALDIYIDSRSHSGTTNTAWKLTAREALSISLATFDSKPLRKLTYADLLEATNGFHNDSLIGSGGFGDVYKAELKDGSV VAIKKLIHISGQGDREFTAEMETIGKIKHDNLVPLLGYCKVREERLLVYEYMKYGSLEDVLHNQKKTGIKLNWAARRKIAIGAAKGLTFLHHNCIPLIIH RDMKSSNVLLDANLEARVSDFGMARLMSTMDTHLSVSTLAGTPGYVPPEYYQSFRCSIKGDVYSYGVVLLELLTGKRPTDSSDFGDNNLVGWVKQHAKLR ISDVFDPVLLKEDPSLEMELLEHLKVACACLDDRSGRRPTMIQVMTMFKEIHAGSGLDSQSTIATEDGGFSADEMVEMSIREGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	0	1	Pt-BRI1.1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	1.00	0.9172	Pt-BRI1.2
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.015G034100 [exp]	1.73	0.9096
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	3.74	0.9129	IAA14.1
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	4.47	0.9087	Pt-LACS2.2
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	4.58	0.8723	Pt-LOX1.6
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	4.69	0.8847	Pt-APK1.2
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.001G323100 [exp]	4.89	0.8982	FBL3,Pt-IPS1.2
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217700 [exp]	6.00	0.8796
AT1G67050			unknown protein		Potri.017G115700 [exp]	6.24	0.8795
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	7.07	0.9046	ACR4.3

Compare expression of checked genes

Potri.005G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.