Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39380 245 / 2e-76 unknown protein AT2G36960 173 / 7e-48 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077700 [exp] 583 / 0 AT4G39380 245 / 2e-76 unknown protein Potri.006G125400 [exp] 172 / 3e-47 AT2G36960 680 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.016G091700 [exp] 170 / 1e-46 AT2G36960 665 / 0.0 TSL-kinase interacting protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033530 [exp] 337 / 5e-113 AT4G39380 216 / 2e-64 unknown protein Lus10020841 [exp] 180 / 2e-54 AT4G39380 99 / 1e-23 unknown protein Lus10013816 [exp] 174 / 6e-48 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10026528 [exp] 84 / 2e-17 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G086800.1 pacid=42804658 polypeptide=Potri.005G086800.1.p locus=Potri.005G086800 ID=Potri.005G086800.1.v4.1 annot-version=v4.1 ATGCCTGAGAAGATAAAGCTGCAGCTTTTCCCAATTGATGAAGCAACTCTTGTGGGCTTGGAAAAGGATGGGTATCATCCCTACTTGGAACTCACTCTAA GCGCTCGTAAAAAAGTATCTTCGGTGCTTAAGCATTTAAATGACAAGTGGGGTTCTTCCAAAATTGCTAGTGGGGAGCCGGTTCTATATCCGTATAACGT AGCTGAAGGTTTAGCTAGGAGGAAGTGGACGTTGAGTGACATTGATATCACTGCAGGAGAGGTCTATGCCGCTATTGGGAACCCTTCTGTTTTCCGTCTA AGGTATGGTTGGTTCTCTAAATCTGAAATTGAACCCGTTGGAGTACCTTCAGCGTCAACTGCCGACGAGGCCTGTTTACAACCTCAGTTCGTGCAGAAAG TTAGCAGTATTAATACAGAGAGTACTTGTGGTGAAGTGAAACGGATGGAGGAAACAAGTGAAGAGTTCAAACCAAGCACTTCAACTGGAGCAATGAATGC GGTTTTGGCTGATAAGATATCTTCCGATGGATCAATTGGACCTAAGGGCAATGAAACAAAGATGGATGTTGGCATTGGGCAGCCATCAACGCTGTGGAAT GACGGTCTAACTGACATAAGCATTGGGGGTCTGCTATCTGAAGCGTCATTGCAAGGACTGTTGAATTCCTGTGATCCAAGATCAAATGGGAGTAACCCAG GCTTGCAGCCATCTCAGATAATCTCTGATTCATTTGATGCCTTTATTACTGCACAAGTAAATGGTTTCCAAGAACCAAGGCTTCCTCCTCACAGTTCTAG CTCATCTATTTTGGATGCCGAGGACACATGCCACGCCTTTGCCGTTAAAAAATTATCTGCCTCAGGCAAAGATTGTCGAACTCTGAGTGGAAGTGCATAT TCTCAGACCTGCAGTCAAGATACTGATTCAAAGTCATCTATGCATCCAACTACGACTGAGGACCTTGGGTGCAAAGAATCTGAAACAGAGCTCTCACTTG GTTCTCGAATGTATAATCATGAAAACAGCCTTGGGCTTTCAGGAATCAAATGGACTGATTCTTTGGGACCCTTTGACCTCGGCCTGTCGTCTTCTAGAAA GATTATCAATGGTGACAGTTTAAGCATCGGCAGAATTATAGCTTCTGATTGA
AA sequence Show only first row Show all	>Potri.005G086800.1 pacid=42804658 polypeptide=Potri.005G086800.1.p locus=Potri.005G086800 ID=Potri.005G086800.1.v4.1 annot-version=v4.1 MPEKIKLQLFPIDEATLVGLEKDGYHPYLELTLSARKKVSSVLKHLNDKWGSSKIASGEPVLYPYNVAEGLARRKWTLSDIDITAGEVYAAIGNPSVFRL RYGWFSKSEIEPVGVPSASTADEACLQPQFVQKVSSINTESTCGEVKRMEETSEEFKPSTSTGAMNAVLADKISSDGSIGPKGNETKMDVGIGQPSTLWN DGLTDISIGGLLSEASLQGLLNSCDPRSNGSNPGLQPSQIISDSFDAFITAQVNGFQEPRLPPHSSSSSILDAEDTCHAFAVKKLSASGKDCRTLSGSAY SQTCSQDTDSKSSMHPTTTEDLGCKESETELSLGSRMYNHENSLGLSGIKWTDSLGPFDLGLSSSRKIINGDSLSIGRIIASD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39380			unknown protein		Potri.005G086800 [exp]	0	1
					Potri.011G070800 [exp]	2.23	0.9093
AT3G12620			Protein phosphatase 2C family ...		Potri.010G214700 [exp]	3.46	0.8411
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	7.87	0.8961
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Potri.013G017500 [exp]	18.73	0.8198
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	19.44	0.8788
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	21.35	0.8465
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.007G095800 [exp]	23.87	0.8344
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	30.33	0.8444
AT4G39630			unknown protein		Potri.005G082500 [exp]	33.24	0.8375
AT1G28120			unknown protein		Potri.001G067400 [exp]	37.62	0.8232

Compare expression of checked genes

Potri.005G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.