Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 322 / 9e-102 Protein kinase superfamily protein (.1) AT1G54610 313 / 7e-100 Protein kinase superfamily protein (.1.2.3) AT1G09600 315 / 5e-99 Protein kinase superfamily protein (.1) AT1G33770 308 / 3e-97 Protein kinase superfamily protein (.1) AT1G71530 302 / 8e-97 Protein kinase superfamily protein (.1.2) AT1G18670 306 / 1e-95 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT5G50860 299 / 2e-94 Protein kinase superfamily protein (.1) AT1G74330 300 / 2e-93 Protein kinase superfamily protein (.1.2) AT3G05050 295 / 9e-93 Protein kinase superfamily protein (.1) AT1G57700 296 / 3e-92 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077600 [exp] 766 / 0 AT1G54610 451 / 8e-153 Protein kinase superfamily protein (.1.2.3) Potri.002G065100 [exp] 460 / 2e-156 AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 323 / 4e-104 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 324 / 2e-102 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 317 / 5e-101 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 319 / 2e-100 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 318 / 2e-100 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 314 / 4e-100 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G003700 [exp] 311 / 2e-97 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005801 [exp] 538 / 0 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10006800 [exp] 506 / 2e-175 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10002469 [exp] 404 / 1e-134 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10000584 [exp] 399 / 5e-133 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10012805 [exp] 320 / 3e-102 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 317 / 5e-101 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 319 / 1e-100 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 315 / 1e-99 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001715 [exp] 313 / 2e-99 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 310 / 2e-98 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G086900.2 pacid=42805496 polypeptide=Potri.005G086900.2.p locus=Potri.005G086900 ID=Potri.005G086900.2.v4.1 annot-version=v4.1 ATGGGGTGTGTTCAGAGCAAGAGTTCAATGTACTCGCCACCTCAGTCACCAGAGAAGTTGAAACAAGAAAATAGGTATGTTAAGGGAGAGAATAGAGGGA GACCTATTGGTCAGAGAGAAGCTGGGAAGATGTCCAGACAAGAATTGGAAAAGAATGGACGAGAGAAGTTAGTTGAGGGAGAAGGGTTAAAGAATGATGT TGGAAATGTGTCGCAAAGATTTTCTTTGAAGAAGGCAGTGGGGGATGAACTTGTGGATGGGTGGCCAAAATGGTTTGTCGATAACTTTCCTAGTGAGGTT TTGGCTGGTTTGGTTCCAAAGAGTGTTGATTCTTATAATAAGCTAGCTAATGTTAATAGCAATGTGTACAAAGCTCGAGATAGAGACACTGGAAAGATAG TTGCTCTAAAGAAGGTAAGATTTGACACATCAGAGCCTGAAAGTGTCAAGTTTATGGCAAGAGAAATAATGATGCTGCAGAAGTTAGATCATCTAAATGT AATCAAGCTTGAAGGAGTAGCCACGTCAAGGATGCAATATAGTCTTTACCTCGTTTTTGATTTCATGCAGTCGAACCTAACCAGGATCGTCTCCCGTCCA GGCGAGAGGCTCACTGAACCACAGGTCAAGTGCTGCATGCAACAACTGCTTTCAGGTCTCCAGCACTGCCACGAGAGGGAATCGCCCGATTTCGGGCTCG CAAATTTCTTCATACCTAAACCAAAACAACCACTTACCAGCGGAGTAGTAACCCTTTGGTATAGAGCTCCAGAGCTATTACTGGGTTTTCCAGATTATGG AGTAGGTTTTGATCTTTCGAATGTTGGATGTTTATTGGCTGAGATGTTCATTAGAAGGCCAATCATGCCTGGAAGGACAGAGTTCGAGCAACTTCATAGG ATTTTCAAGCTTTGTGGTTCACCACCAGAGGACTATTGGAAGATAATGAGGCTACCAACAAGCTTCAGACCACCACAACACTACAAACCTACATATCGTG GGACTGCTGCTTCTGCTCTCCAAAGTCACTTCTTCTCTTCAAGTCCACTGCCATGCCAACTTCCAGATCTACCAGTAATTTACAAAGAGGAGGACGAGCC AGCTCAAATCAGTGATAGGAAAAGGCGTAGGTCAAGAAATCAATCATCCAGGGCAAGTCGAGAAGAGGTATATTCTTGTTTTAATCTTCTCAACATACAT GTGGAGAAAATCTCAGAGCCAAGTACGAATAATAACCTTGAGACAGGAAACGGTGCAAGTAGTAGCAGCACATTCTCTGTACTAAAGCCAATACAGATAG AAGAACCAAGCCTCCACCGCTCATCCTTTTCGCCAATTCTTAATCATTCTAATCAGAACAGATTGCTAAGAACTGAGGCTCATTCCAATGCCACCAAGAA TATCCAGAACTTCACCCTTTTACAGGCTTCTATAACAGACATCATTAACCATAATGGAGGCAATGCAATGTTAGCTGGTTATCGCCGGTCTGTTTCTACT TTGGATTTTCGTACTTTTGATTCAGAAAAGATATCGAAACTCTTTGGACTGGATAAAGATGAGGCCAAGAAAAATTTCACTAGTTATGATTTGCAACTTA TTTGTCAATGTGAAGTTGCATCTTCAGCTCTAGCTTTTGCTGTGATGTAA
AA sequence Show only first row Show all	>Potri.005G086900.2 pacid=42805496 polypeptide=Potri.005G086900.2.p locus=Potri.005G086900 ID=Potri.005G086900.2.v4.1 annot-version=v4.1 MGCVQSKSSMYSPPQSPEKLKQENRYVKGENRGRPIGQREAGKMSRQELEKNGREKLVEGEGLKNDVGNVSQRFSLKKAVGDELVDGWPKWFVDNFPSEV LAGLVPKSVDSYNKLANVNSNVYKARDRDTGKIVALKKVRFDTSEPESVKFMAREIMMLQKLDHLNVIKLEGVATSRMQYSLYLVFDFMQSNLTRIVSRP GERLTEPQVKCCMQQLLSGLQHCHERESPDFGLANFFIPKPKQPLTSGVVTLWYRAPELLLGFPDYGVGFDLSNVGCLLAEMFIRRPIMPGRTEFEQLHR IFKLCGSPPEDYWKIMRLPTSFRPPQHYKPTYRGTAASALQSHFFSSSPLPCQLPDLPVIYKEEDEPAQISDRKRRRSRNQSSRASREEVYSCFNLLNIH VEKISEPSTNNNLETGNGASSSSTFSVLKPIQIEEPSLHRSSFSPILNHSNQNRLLRTEAHSNATKNIQNFTLLQASITDIINHNGGNAMLAGYRRSVST LDFRTFDSEKISKLFGLDKDEAKKNFTSYDLQLICQCEVASSALAFAVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	0	1
					Potri.005G161366 [exp]	2.00	0.8419
AT5G05800			unknown protein		Potri.001G370432 [exp]	2.82	0.8044
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.008G126100 [exp]	8.77	0.7154
AT1G32583			unknown protein		Potri.010G246300 [exp]	8.94	0.7254
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	9.48	0.6983
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	9.79	0.7670
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	10.19	0.7560
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Potri.001G299300 [exp]	11.61	0.6050
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	12.24	0.7685
AT5G05800			unknown protein		Potri.010G132850 [exp]	16.12	0.6675

Compare expression of checked genes

Potri.005G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.