Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09900 731 / 0 RPN5A, MSA, EMB2107 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) AT5G64760 709 / 0 RPN5B regulatory particle non-ATPase subunit 5B (.1.2) AT5G42970 51 / 9e-07 FUS4, EMB134, CSN4, COP14, FUS8, COP8, ATS4 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076900 [exp] 835 / 0 AT5G09900 729 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Potri.014G180800 [exp] 48 / 1e-05 AT5G42970 695 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.002G263200 [exp] 47 / 2e-05 AT5G42970 700 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006797 [exp] 768 / 0 AT5G09900 744 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Lus10005804 [exp] 766 / 0 AT5G09900 749 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.005G087100.1 pacid=42805108 polypeptide=Potri.005G087100.1.p locus=Potri.005G087100 ID=Potri.005G087100.1.v4.1 annot-version=v4.1 ATGGAGGGAAAAGCGAATTTGGAAGCGGCGATAGAACAACTGCAGAATGTCGAAAAGCAGATGAGGCTTGCCGGAGACGTCGCCGGCACTAAGAAAGCCG TTACCGAAATTCTCCAACTCTGCTTCGAAGCTAAAGATTGGAAATCTCTAAATGACCAAATTGTCCTTCTCTCTAAAAAACGTGGTCAACTCAAACAGGC TGTAACTGCAATGGTCCAGCAAGCAATGCAGTACATTGACGAGACGCCGGATCTTGACACTCGTGTAGAACTTATTAAAACACTTAACAGTGTGTCTGCT GGCAAGATATATGTTGAAATTGAGAGAGCAAGGTTGATTAGAAAACTAGGTAAGATCAAGGAAGAACAAGGGCTTACAGCTGAAGCTGCAGATCTGATGC AAGAAGTTGCGGTGGAAACTTTTGGTGCTATGGCAAAAACTGAGAAAATTGCGTTTATTCTTGAGCAAGTTCGTCTATGCCTTGACCGCCAGGATTATGT TCGTGCACAAATTCTCTCAAGGAAGATTAGTACAAGGGTTTTTGATGCTGATACTTCTAAGTTGAAGAAGAAACCAAAGGAAGGTGATAATGTTGTGGAA GAGGCTCCTGCTGATATACCATCACTGTTGGAGTTAAAGCGGATCTACTATGAATTGATGATACGGTACTACTCACACGACAATGATTATCTGGAAATTT GCCGTTGCTACAAGGCAATATATGAGATTCCTTCTGTAAAGGAAAACCCTGCCCAATGGATTCCGGTCTTGAGGAAAATCTGTTGGTACTTGGTACTTTC ACCTCACGATCCAATGCAGTCAAGCCTTCTGAATTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAAATTCAAGTTGTTGTTGAAGCAGTTGGTG ACAATGGAAGTCATCCAGTGGACTTCTCTTTGGAATGAATTCATGGATGAGTTTGAAAGTGAGAAGAACTTACTTGGGGGATCTTTGGGTGACAAAGCAG CAGAGGATTTGAGGCAAAGAATAATTGAACATAATATCATTGTTGTTTCAAAGTATTACTCGAAGATTACTGTGAAGAGAGTAGCAGAGTTATTGTGTCT CAGCATCCAGGAAGCTGAGAAGCATCTATCTGATATGGTTGTTTCCAAAGCTCTGGTGGCAAAGATTGACAGGCCATTGGGAATAGTGTGTTTCCAAGTA GCAAAGGATAGCAATGACATTCTCAACTCGTGGGCAATGAACTTGGAGAAGTTGCTTGATCTTGTTGAGAAGAGTTGCCACCAAATACACAAAGAAACTA TGGTCCACAAAGCTGCTCTAAAAGTTTGA
AA sequence Show only first row Show all	>Potri.005G087100.1 pacid=42805108 polypeptide=Potri.005G087100.1.p locus=Potri.005G087100 ID=Potri.005G087100.1.v4.1 annot-version=v4.1 MEGKANLEAAIEQLQNVEKQMRLAGDVAGTKKAVTEILQLCFEAKDWKSLNDQIVLLSKKRGQLKQAVTAMVQQAMQYIDETPDLDTRVELIKTLNSVSA GKIYVEIERARLIRKLGKIKEEQGLTAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADTSKLKKKPKEGDNVVE EAPADIPSLLELKRIYYELMIRYYSHDNDYLEICRCYKAIYEIPSVKENPAQWIPVLRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPKFKLLLKQLV TMEVIQWTSLWNEFMDEFESEKNLLGGSLGDKAAEDLRQRIIEHNIIVVSKYYSKITVKRVAELLCLSIQEAEKHLSDMVVSKALVAKIDRPLGIVCFQV AKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKAALKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.005G087100 [exp]	0	1
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	2.00	0.8799
AT1G16570			UDP-Glycosyltransferase superf...		Potri.001G394300 [exp]	3.60	0.8355
AT1G67350			unknown protein		Potri.003G173000 [exp]	3.87	0.8831
AT5G49540			Rab5-interacting family protei...		Potri.008G102200 [exp]	4.47	0.8692
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	7.93	0.8477
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	8.77	0.8574
AT3G52580			Ribosomal protein S11 family p...		Potri.011G080500 [exp]	8.83	0.8629	Pt-RPS14.3
AT4G29735			unknown protein		Potri.004G215200 [exp]	9.32	0.8777
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.006G267600 [exp]	10.24	0.8147
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Potri.006G035900 [exp]	10.72	0.8092

Compare expression of checked genes

Potri.005G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.