Plant FIBer expression Database

Potri.005G087300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21790 1451 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G076700
[exp]
1539 / 0 AT2G21790 1448 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Potri.005G194900
[exp]
1387 / 0 AT2G21790 1421 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033526
[exp]
1498 / 0 AT2G21790 1514 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Lus10020845
[exp]
1498 / 0 AT2G21790 1503 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Lus10018867
[exp]
1318 / 0 AT2G21790 1358 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
CL0339 PFL-like PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
CL0339 PF03477 ATP-cone ATP cone domain
Representative CDS sequence
>Potri.005G087300.1 pacid=42803634 polypeptide=Potri.005G087300.1.p locus=Potri.005G087300 ID=Potri.005G087300.1.v4.1 annot-version=v4.1
ATGTATGTGGTGAAGAGAGATGGGAGGCAAGAGACTGTCCACTTCGACAAGATCACTGCTAGACTGAAGAAGCTTAGCTATGGCCTTAGCATTGACCACT
GTGACCCAGTCTTGGTGTCTCAGAAGGTCTGTGCTGGTGTCTACAAAGGTGTCACCACTAGCCAACTTGATGAATTGGCTGCTGAGACTGCCGCTGCTAT
GACTGCCAATCATCCTGATTATGCCTCCTTGGCTGCCAGGATTGTTGTTTCAAACCTGCATAAGAACACTCAGAAATCATTTTCTGAGACGATCAAAATC
ATGTACAACCATTTTAATGATAAATCTGGACTGAAGGCTGCTTTGATTGCTGATGATATTTATGAAATAATAATGAAGAATTCTGCTCGCTTGGACTCTG
AGATCATCTATGATCGGGACTTTGACTATGATTACTTTGGCTTCAAGACCCTTGAAAGATCCTACCTCCTGAAGGTCCAAGGAAAGGTTGTGGAAAGGCC
TCAGCACATGCTGATGAGGGTTGCTGTTGGAATTCACAAAGATGATATTGATTCAGCTATCAAAACGTACCATTTGATGTCTCAGCGGTGGTTCACTCAT
GCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCTCAATTGAGCAGCTGCTTCTTGGTGTGCATGAAAGATGATAGTATTGAAGGAATATATGATA
CATTGAAGGAGTGTGCTGTTATCAGTAAATCAGCAGGAGGAATCGGTGTATCTGCCCACAACATCCGTGCCACTGGAAGTTATATTCGTGGGACAAATGG
GACATCTAATGGCATTGTTCCAATGTTGAGGGTGTTCAATGATACTGCCCGCTATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTGCTTTTGCTGTGTAT
TTGGAGCCATGGCATGCTGATGTATTTGAGTTTCTGGATCTTAGGAAAAACCATGGAAAGGAAGAAAACCGTGCTCGAGATTTATTCTATGCTCTGTGGG
TTCCTGATCTCTTTATGGAGAGAGTTCAAAGCAACGGGCAATGGTCATTGTTTTGCCCTAATGAGGCTCCAGGTTTGGCAGATTGTTGGGGCAAAGAGTT
TGAGGAACTATACACCCGATATGAAAGAAATGGCAAAGCCAAGAAGGTTGTCCAGGCACAAAACCTCTGGTTTGAGATCTTGAAATCCCAGATAGAGACT
GGGACCCCCTATATGCTTTTCAAGGATACTTGCAATAGGAAAAGCAACCAACAAAACCTGGGTACCATAAAATCTTCAAATTTGTGCACTGAGATAATTG
AATATACAAGCCCAACGGAAACTGCTGTCTGCAATCTGGCTTCAATTGCTCTACCACGATTTGTGAGAGAGATGGGAGTTCCTGTGGAGTCTCATCCATC
TAAACTTGTTGGGAGTAGAGGTTTCAAGAGTAGATATTTTGACTTTGAGAAACTAGCTGAGGTTACAGGAGTGGTTACATCCAATCTTAACAAAATAATT
GATGTCAATTACTATCCAGTCGAAACTGCTAGGAGGTCAAATTTCCGACATAGACCCATTGGCATTGGAGTTCAAGGTCTTGCAGATACCTTCATTCTGC
TCGGAATGTCATTTGACTCACCAGAGGCTCAAAAGCTGAATAAGGACATATTTGAAACCATTTATTACCATGCCCTGAAAGCATCTTCTGAGATTGCTGC
AAGAGAAGGTCCCTATGAAACATATGAAGGAAGTCCTGTGAGCAAGGGAATTCTGCAGCCGGACATGTGGGGTGTAACTCCTTCAAATCTGTTGTGGGAC
TGGGATGCCTTAAGGGAAATGATATCTAAGAATGGGGTTAGAAATTCACTTCTTTTGGCACCAATGCCAACAGCTTCAACCAGCCAGATTCTTGGAAACA
ACGAGTGCTTTGAGCCATATACTTCAAACATTTATAGCCGTAGAGTTCTAAGTGGTGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGACTTGACCGA
GATGGGCCTCTGGTCTCCTGCTCTGAAGAACAAAATAATTTATGAAGATGGCTCTGTCCAGAACATTCCAGAAATCCCAAATGATCTGAAGTTTATATAC
AAGACTGTTTGGGAGATCAAGCAAAAGACATTGGTTGACATGGCTGTTGATCGAGGATGCTACATAGATCAGAGTCAAAGTCTTAATATACATATGGACC
AACCCAATTTTGGAAAACTAACTTCCCTACACTTTTATGCATGGTCAAAGGGTCTAAAGACAGGGATGTATTATCTACGATCACGTGCTGCAGCTGATGC
CATCAAGTTCACTGTTGATACTTCTGTTCTTCAAGATAAGAAGCTGAAATCGGATGGTGCTGCTGCTGCTGCTGCTGATGATGATGATACCAAAATGGCT
CAAATGGTTTGCTCCCTTGCAAACCGTGATGACTGCTTGGCCTGTGGAAGTTGA
AA sequence
>Potri.005G087300.1 pacid=42803634 polypeptide=Potri.005G087300.1.p locus=Potri.005G087300 ID=Potri.005G087300.1.v4.1 annot-version=v4.1
MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIVVSNLHKNTQKSFSETIKI
MYNHFNDKSGLKAALIADDIYEIIMKNSARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHLMSQRWFTH
ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSAHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
LEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGKEFEELYTRYERNGKAKKVVQAQNLWFEILKSQIET
GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPVESHPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNKII
DVNYYPVETARRSNFRHRPIGIGVQGLADTFILLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVSKGILQPDMWGVTPSNLLWD
WDALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEIPNDLKFIY
KTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSVLQDKKLKSDGAAAAAADDDDTKMA
QMVCSLANRDDCLACGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21790 ATRNR1, RNR1, C... CRINKLY LEAVES 8, RIBONUCLEOTI... Potri.005G087300
[exp]
0 1
AT5G19330 ARIA ARM repeat protein interacting... Potri.005G210000
[exp]
5.91 0.8911
AT4G13690 unknown protein Potri.003G177900
[exp]
9.16 0.8763
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.006G251200
[exp]
10.53 0.8819 Pt-CPP1.22
AT3G57060 binding (.1.2) Potri.006G041500
[exp]
11.40 0.8893
AT3G23740 unknown protein Potri.002G236300
[exp]
12.00 0.8738
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
12.16 0.8807
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
13.19 0.8781
AT5G62410 TTN3, ATSMC4, A... TITAN 3, structural maintenanc... Potri.003G108400
[exp]
19.74 0.8661 CPE902,Pt-SMC2.2
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Potri.004G131600
[exp]
20.85 0.8796
AT5G46740 UBP21 ubiquitin-specific protease 21... Potri.001G142000
[exp]
22.80 0.8740 Pt-UBP21.2

Potri.005G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.