Plant FIBer expression Database

Potri.005G087400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G076600
[exp]
78 / 1e-19 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G087400.2 pacid=42805277 polypeptide=Potri.005G087400.2.p locus=Potri.005G087400 ID=Potri.005G087400.2.v4.1 annot-version=v4.1
ATGATCATGGCCATGGAAATTATGGCAGAACTGGAAGCTTTACTTAGAATCCATCCCATGACCTTAACGGACTTGGACGTGGCTGCAGCGCAACAACTCG
TCCGGCTAAGCGGCGAAGACTACAGCAACAACAATAACAATCAGAAGAAGAGGAGGAGAAAGAATAAGAATGACGGTGATTTTGAAGATGATGAGGAGGA
GTTCGATCGAAGCAGCCAAAATGAGATCACTTCAAAGACGACTGAAGAGAATTTCGGGAAAGAAGAGGAGGTTGCTCGACCTAGAAAGAAAAGATACAGG
TCTCTTGTGAGTGTTTACCAGGCGCCATGA
AA sequence
>Potri.005G087400.2 pacid=42805277 polypeptide=Potri.005G087400.2.p locus=Potri.005G087400 ID=Potri.005G087400.2.v4.1 annot-version=v4.1
MIMAMEIMAELEALLRIHPMTLTDLDVAAAQQLVRLSGEDYSNNNNNQKKRRRKNKNDGDFEDDEEEFDRSSQNEITSKTTEENFGKEEEVARPRKKRYR
SLVSVYQAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G087400
[exp]
0 1
AT4G24570 DIC2 dicarboxylate carrier 2 (.1) Potri.007G113000
[exp]
1.00 0.9569
AT1G23710 Protein of unknown function (D... Potri.010G041300
[exp]
2.00 0.9558
AT3G57450 unknown protein Potri.006G050800
[exp]
2.44 0.9533
AT5G67080 MAPKKK19 mitogen-activated protein kina... Potri.005G139300
[exp]
4.47 0.9423
AT5G51190 AP2_ERF Integrase-type DNA-binding sup... Potri.003G150800
[exp]
5.47 0.9355 ERF5
AT4G12410 SAUR-like auxin-responsive pro... Potri.003G113100
[exp]
5.91 0.9269
AT5G59820 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C... Potri.009G027700
[exp]
8.48 0.9190 RHL41.1
AT1G25560 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPON... Potri.010G129200
[exp]
8.66 0.9105 RAV2.2,RAV1
AT1G21010 unknown protein Potri.005G259100
[exp]
8.94 0.9243
AT5G22250 AtCAF1b CCR4- associated factor 1b, Po... Potri.004G200400
[exp]
12.48 0.9138

Potri.005G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.