Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1784 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 1755 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 1742 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 1739 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G17420 1367 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 1364 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G05170 1357 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 1338 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 1191 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT3G03050 799 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076500 [exp] 1984 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1762 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 1759 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 1556 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1546 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.001G266400 [exp] 1408 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1404 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1402 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1399 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041063 [exp] 1859 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1852 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1845 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007538 [exp] 1377 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1373 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1367 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 1363 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10018902 [exp] 1358 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10006161 [exp] 1164 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003525 [exp] 944 / 0 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.005G087500.1 pacid=42803301 polypeptide=Potri.005G087500.1.p locus=Potri.005G087500 ID=Potri.005G087500.1.v4.1 annot-version=v4.1 ATGAATACCGGGGGCCGACTCATTGCCGGTTCTCACAACAGGAACGAGTTTGTCCTCATAAATGCGGATGAGAATGCAAGAATTAAGTCAGTGAAAGAAT TGAGTGGGCAAGTGTGTCAGATATGTGGGGATGAGATTGAAATCACAGTGGATGGAGAGCCATTTGTTGCGTGCAATGAATGTGCTTTCCCTGTGTGTCG CCCCTGCTATGAATATGAGAGAAGAGAGGGAAATCAAGCTTGCCCTCAATGCAAGACCAGATACAAGCGCCTCAAAGGTAGTCCAAGGGTTGAGGGTGAC GAGGAAGAAGATGATACAGATGATTTGGAACACGAGTTTGATTATGGAAACCTTGATGGTTTAAGCCCAGAACAAGTTGCAGAGGCAATGCTCTCTTCAC GCATAAACACTGGCCGTGCTTCTCACTCTAATACATATGGAATTCCCACACAAGGGGAACTTGATTCATCTCCCCTCAGCTCTAAAATTCCTCTTTTAAC TTATGGCGAGGAGGATGCCGAGATTTCTTCTGACCGACATGCACTTATTGTACCACCACACATGAGTCATGGAAATAGAGTTCATCCAACTTCATTTTCT GATCCATCTATACCTTCTCAACCAAGACCAATGGTTCCAAAGAAAGACATTGCAGTGTACGGGTATGGGAGTGTGGCCTGGAAGGACAGAATGGAGGACT GGAAGAAAAGACAGAATGACAAACTTCAGGTTGTTAAGCATGAAGGAGGATATGATGGTGGAAACTTTGAAGGGGATGAACTGGATGATCCTGATTTGCC CATGATGGATGAGGGCAGGCAGCCACTTTCAAGGAAGTTACCAATTCCCTCAAGCAAGATAAACCCATACAGAATGATAATCATCCTACGTCTTGTGATT CTTGGCATCTTTTTTCACTATAGAATTCTCCACCCAGTCAATGACGCATATGGTTTGTGGCTGACATCAGTAATATGTGAAATATGGTTCGGAGTATCAT GGATTCTAGACCAGTTTCCAAAATGGTACCCTATAGAACGGGAAACATACCTTGATAGGCTATCACTGAGGTATGAAAAAGAAGGGAAACCATCTGAGTT AGCCAGTGTAGACATTTTTGTAAGTACAGTTGATCCTATGAAAGAACCTCCGCTGATCACTGCGAACACTGTTCTCTCTATTCTCGCGGTTGATTATCCT GTGGATAAAGTTGCATGCTATGTGTCAGACGATGGTGCCGCCATGCTTACATTTGAAGCTCTCTCCGAGACGTCTGAATTTGCTAGGAAGTGGGTTCCAT TTTGCAAGAAATTTAACATCGAGCCCCGTGCCCCTGAGTGGTATTTTTCTCAGAAGATTGACTATTTGAAAAATAAAGTTCATCCAGCATTTGTCAGGGA AAGGCGTGCCATGAAGAGAGAATATGAAGAATTCAAAGTGAGGATAAATGGGTTGGTTTCCACAGCACAAAAGGTTCCGGAAGATGGTTGGACAATGCAA GATGGAACTCCATGGCCTGGAAACAATGTACGAGACCATCCTGGCATGATTCAGGTTTTCCTTGGTCAAAGTGGAGTTCGTGATGTGGAAGGATGCGAGT TACCTCGTCTGGTTTATGTTTCTCGTGAGAAGAGACCAGGGTTTGAACACCATAAGAAGGCTGGGGCCATGAATGCACTGGTGCGGGTCTCTGCAGTTCT GTCAAATGCCCCTTATCTTCTGAATGTTGATTGTGACCATTATATTAACAATAGCAGAGCACTTAGAGAAGCCATGTGTTTCATGATGGATCCAACATCA GGGAAAAAAGTTTGTTATGTGCAGTTTCCTCAACGATTTGATGGCATTGATCGTCATGATAGATACTCAAATCGGAACGTTGTATTCTTTGATATAAATA TGAAAGGATTAGATGGTTTACAAGGACCAATATATGTTGGAACTGGGTGTGTTTTTCGGAAGCAAGCACTCTATGGTTATGATGCACCTGTCAAGAAGAA ACCCCCTGGGAAGACTTGCAACTGTTTGCCAAAATGGTGCTATCTATGGTGTGGGTCCAGAAAAAACAAGAAATCAAAGCCAAAGAAGGAGAAGAAGAAG TCAAAGAACAGGGAAGCATCAAAGCAGATACATGCCCTTGAAAATATTGAAGGAACTGAAGAATCAACTTCTGAAAAATCTTCTGAAACATCCCAAATGA AGCTGGAAAAGAAGTTTGGGCAATCTCCAGTGTTTGCAGTTTCCACTCTTCTGGAGAATGGTGGAGTTCCTCGGGATGCATCTCCTGCATCACTGTTGAG AGAAGCCATCCAAGTTATCAGCTGTGGTTATGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGCTCTGTTACAGAAGATATCTTGACA GGATTCAAGATGCACTGCCATGGATGGCGGTCTGTTTACTGCATACCTAAGCGGCCTGCATTTAAGGGGTCAGCTCCAATTAATCTGTCAGATCGTCTAC ACCAGGTTCTTCGGTGGGCCCTCGGTTCTGTTGAGATTTTCTTCAGTAGACACTGTCCAATTTGGTATGGTTATGGGGGTGGATTGAAGTGGTTGGAACG ATTTTCGTACATAAACTCAGTTGTGTATCCTTGGACATCCATTCCCTTGCTTGTCTACTGTACACTACCAGCTATATGCCTTCTCACTGGGAAATTCATT GTTCCTGAGATTAGTAATTATGCCAGTATCGTGTTCATAGCCCTCTTCATATCTATAGCTGCAACTGGTATCCTCGAGATGCAGTGGGGTGGTGTCGGGA TAGATGACTGGTGGAGAAATGAACAATTTTGGGTGATTGGAGGTGTTTCATCACACCTGTTCGCTCTCTTCCAGGGTTTGCTCAAGGTTTTGGCTGGTGT TAGTACAAACTTCACTGTTACATCAAAAGGAGCGGATGATGGAGAATTCTCAGAGCTTTACATATTCAAGTGGACATCACTGTTGATCCCTCCTACAACG TTGTTGATCATGAACATAGTTGGCGTTGTGGTTGGGGTCTCAGACGCCATCAACAATGGGTATGATTCATGGGGTCCATTGTTTGGGAGGCTATTTTTTG CCTTATGGGTCATCCTCCACCTCTACCCCTTCCTCAAAGGGCTTCTTGGGAAACAAGATCGCATGCCCACCATCATTTTGGTATGGTCAATTCTACTGGC TTCAATCCTAACTCTCTTGTGGGTTCGTGTAAACCCATTTGTGTCAAGAGATGGTCCTGTCTTGGAATTGTGTGGACTGAACTGTGATTAG
AA sequence Show only first row Show all	>Potri.005G087500.1 pacid=42803301 polypeptide=Potri.005G087500.1.p locus=Potri.005G087500 ID=Potri.005G087500.1.v4.1 annot-version=v4.1 MNTGGRLIAGSHNRNEFVLINADENARIKSVKELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGD EEEDDTDDLEHEFDYGNLDGLSPEQVAEAMLSSRINTGRASHSNTYGIPTQGELDSSPLSSKIPLLTYGEEDAEISSDRHALIVPPHMSHGNRVHPTSFS DPSIPSQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHEGGYDGGNFEGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVI LGIFFHYRILHPVNDAYGLWLTSVICEIWFGVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYP VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVSTAQKVPEDGWTMQ DGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGCELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSRALREAMCFMMDPTS GKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRKQALYGYDAPVKKKPPGKTCNCLPKWCYLWCGSRKNKKSKPKKEKKK SKNREASKQIHALENIEGTEESTSEKSSETSQMKLEKKFGQSPVFAVSTLLENGGVPRDASPASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILT GFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKFI VPEISNYASIVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKGADDGEFSELYIFKWTSLLIPPTT LLIMNIVGVVVGVSDAINNGYDSWGPLFGRLFFALWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSRDGPVLELCGLNCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	0	1	ATH.1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	1.00	0.8376
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.010G113900 [exp]	1.41	0.8324
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.013G038100 [exp]	1.73	0.8161
AT3G14880			unknown protein		Potri.007G098800 [exp]	4.47	0.8134
AT1G45688			unknown protein		Potri.002G124600 [exp]	6.70	0.8088
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	13.78	0.7702
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	18.00	0.7877	Pt-BON1.2
AT1G57680			unknown protein		Potri.003G003500 [exp]	18.08	0.7218
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	22.44	0.7854
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	24.10	0.8029

Compare expression of checked genes

Potri.005G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.