Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08580 540 / 0 Calcium-binding EF hand family protein (.1) AT4G27790 190 / 2e-57 Calcium-binding EF hand family protein (.1) AT3G59440 55 / 1e-08 Calcium-binding EF-hand family protein (.1) AT2G43290 49 / 2e-06 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT5G21274 46 / 7e-06 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 45 / 8e-06 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 45 / 8e-06 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 45 / 8e-06 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 45 / 8e-06 CAM7 calmodulin 7 (.1) AT4G36070 47 / 2e-05 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076300 [exp] 665 / 0 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1) Potri.015G010300 [exp] 178 / 9e-53 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1) Potri.007G057600 [exp] 53 / 2e-07 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.012G048200 [exp] 49 / 6e-07 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.006G026700 [exp] 45 / 9e-06 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 45 / 9e-06 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 45 / 9e-06 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 46 / 1e-05 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 45 / 1e-05 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010165 [exp] 478 / 4e-170 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10017370 [exp] 474 / 9e-168 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10022381 [exp] 177 / 3e-52 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) Lus10005911 [exp] 74 / 1e-14 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1) Lus10027701 [exp] 54 / 6e-08 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10030986 [exp] 50 / 5e-07 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10041914 [exp] 51 / 9e-07 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 51 / 1e-06 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10027283 [exp] 45 / 1e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 45 / 1e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.005G087600.5 pacid=42804651 polypeptide=Potri.005G087600.5.p locus=Potri.005G087600 ID=Potri.005G087600.5.v4.1 annot-version=v4.1 ATGAGCAAGACCTCAATAATTATATACATAACTATAGCTCTACTTTTTCTTTTACTAGTGACTCAAACTCCGAATAAACCATCAAACCACCGCAACCGCC GCATCAAGATCCGCTCTAAATTCGACTTCGAACCCCGTCAGCACAACCACCACCATGAACCCGTGCCTTTTGACCCCCTTGTTGCTGACATTGAACGCAA ACGTGAAGACAAGGAATGGGAGAAACAGTACTTTGAACATTCACATCCTGAATTTGTTCATGACTCAGCTGCTGCTGGTCACGAGTCACAGCCCGAGTGG GAGGATTTTATTGATGCTGAAGACTATGTGAATGATGAAGAGAAATTTAATGTCACTAATAGGTTGTTGGTGTTATTTCCAAAGATTGATGTGGAACCAG ATGATGGTTATGTGAGTGAACATGAATTGACTGAGTGGAATTTGAAACAATCTGAGAAGGAAGTTATGCATAGGACTAAAAGGGAGATGGATGTTCATGA TAAAAATCATGATGGGTTTGTTTCATTTGCGGAGTATGAGCCGCCCAGTTGGGTACGGAATTCAGACAAGAATTCTTTTGGTTATGATATGGGTTGGTGG AAAGAAGAACATTTCAATGCATCAGATGCAGACGGAGATGGCTTTCTGAATATAACTGAGTTCAATGACTTTCAACATCCTGCTGACAGCAAAAACCCAA AGCTACTTCAATGGTTGTGCAAGGAGGAAGTAAGGGAAAGAGATTCTGACAAAGATGGCAAGGTTAACTTTCAAGAGTTTTTCCACGGGCTATTCGATTT GGTGAGAAATTATGATGAAGAAGGTCATAATTCTTCACATCTGTCAGACAATTTAATGGAGGCCCCTGCTAAGAAGTTGTTCGATGAGCTAGACAAAGAT GGTGATGGATTTTTGTCAGACATAGAATTGCTACCTATAATTGGGAAACTTCATCCATCAGAGCGTTATTATGCAAAACAACAAGCTGATTACATCTTGT CACAGGCTGATACGGATAAAGATGGACGTCTATCCTTGACAGAGATGATTGAGAACCCATATGTATTTTACAGTGCTATTTTCAGTGACGAAGATGACGA CTATGACATACATGATGAGTTCCGTTAA
AA sequence Show only first row Show all	>Potri.005G087600.5 pacid=42804651 polypeptide=Potri.005G087600.5.p locus=Potri.005G087600 ID=Potri.005G087600.5.v4.1 annot-version=v4.1 MSKTSIIIYITIALLFLLLVTQTPNKPSNHRNRRIKIRSKFDFEPRQHNHHHEPVPFDPLVADIERKREDKEWEKQYFEHSHPEFVHDSAAAGHESQPEW EDFIDAEDYVNDEEKFNVTNRLLVLFPKIDVEPDDGYVSEHELTEWNLKQSEKEVMHRTKREMDVHDKNHDGFVSFAEYEPPSWVRNSDKNSFGYDMGWW KEEHFNASDADGDGFLNITEFNDFQHPADSKNPKLLQWLCKEEVRERDSDKDGKVNFQEFFHGLFDLVRNYDEEGHNSSHLSDNLMEAPAKKLFDELDKD GDGFLSDIELLPIIGKLHPSERYYAKQQADYILSQADTDKDGRLSLTEMIENPYVFYSAIFSDEDDDYDIHDEFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	2.64	0.8951	CESA3.1
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	3.60	0.9194
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.009G013600 [exp]	5.91	0.9019
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.012G129700 [exp]	7.74	0.8745	YLS7.2
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	11.22	0.8741
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	11.61	0.9092
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	13.26	0.9115
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	15.68	0.8318
AT3G58640			Mitogen activated protein kina...		Potri.014G142700 [exp]	16.58	0.8532
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	17.32	0.9043	GAPDH1.4

Compare expression of checked genes

Potri.005G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.