Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14610 1502 / 0 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G16715 630 / 0 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G27160 191 / 1e-55 valyl-tRNA synthetase / valine--tRNA ligase-related (.1) AT5G49030 127 / 1e-29 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 113 / 3e-25 tRNA synthetase class I (I, L, M and V) family protein (.1) AT4G04350 93 / 8e-19 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G09620 44 / 0.0006 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004100 [exp] 1657 / 0 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.017G124500 [exp] 628 / 0 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G090732 [exp] 273 / 8e-82 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.010G014500 [exp] 128 / 6e-30 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 107 / 3e-23 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 103 / 3e-22 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.011G009600 [exp] 100 / 6e-21 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033331 [exp] 1514 / 0 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 1481 / 0 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10028505 [exp] 606 / 0 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10009139 [exp] 516 / 9e-168 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10034171 [exp] 125 / 6e-29 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10043413 [exp] 125 / 8e-29 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024041 [exp] 110 / 3e-24 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 106 / 6e-23 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10015552 [exp] 98 / 2e-20 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [poplar] [flax] DALR PF08264 [poplar] [flax] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Potri.005G087850.1 pacid=42802731 polypeptide=Potri.005G087850.1.p locus=Potri.005G087850 ID=Potri.005G087850.1.v4.1 annot-version=v4.1 ATGGAAGCAACACCCGAGCAACTAGAGCGCAAGAAAAAGAAGGAAGAGAAGGCCCGAGAAAAAGAACTGAAAAAACTTAAAGCTGCACAAAAAGAAGCTA AATTTAAGGTACAACTCCAATCTAAGAAAAAATCAAGGCGAGAAGAGGAGGAGAAGGTGGTGGAGGAGGAAGAGGATTATAGAGACCCCCTCACTCCTTC TGGACAAAAGAAAAGACTTTCTGCTATTATGCCAAAAAACTACAATCCCTCCAATGTAGAGAAATGTTGGTACGAGTGGTGGGAGGCTTCAGGGTTTTTT GTGGCCGATGCCAACAGTTCTAAACCCCCTTTTGTTATATTGTTCCCCCCACCAAATGTGACTGGGAACCTACATTTAGGGCATGCGCTCACAGCTGCTA TTCAGGATACAATGATCCGCTGGAAGAGAATGTCTGGATTTAATGCCTTATGGGTGCCTGGTCTTGACCATGCTGGGATTGCTACACAGGTCGTAGTAGA AAAGAAGTTGATGCGTGAGCGCCGCTCGACAAGGCATGATCTAGGTCGTGAAAAGTTTGTATCTGAAGTTTGGAAGTGGAAGCACGAGCATGGGGGTAAC ATATTACAACAGCTTCGCAGGTTGGGTGCATCCCTCGACTGGTCCCGCGAGTGTTTTACAATGGATGAAAAAAGATCAAAGGCTGTGATAGAGGAATTTG TTCGGCTATTTAAGGAAGGTCTTATATATAGGGATCTCCGGCTAGTACATTGGGACTGCACCTTACGAACAGCTATATCTGATGATGAAGTCGATAAAAT TGACATCAAAGAGAGGAAATTTCTAAATATTCCTGGTTATGACAAACAAGTGGAGTTTGGTGTTTTAACCTCATTTGCCTACCCTATTGAGGGAGGGCTA GGCGAAATTGTTGTTTCCACCACTAGGGTGGAAACAATGCTTGGTGATACAGCTATTGCTGTACATCCAGGTGACGAGAGGTACAGCCATCTGCACGGGA AATTTGCTAATCATCCATTCAATGGAAGAAAACTTCCAATAATTTGTGATGCCATTCTTGTTGATCCCAGTTTCGGGACAGGTGCTGTCAAGATCACTCC TGCCCATGATCAAGATGATTTTAAGGCTGGGAAGCGTCACAGTCTTGAATTTATTGTTATGTTTACTGACGATGGAAAGATAAATGATAATGGCGGTGCA GAGTTCTCAGGGATGCCACGTTTTGAGGCACGCGAGGCAGTGAAGGAAGCTCTGAAGAAAAAGGGATTGTATAGAGGTGCTGAAAACAATGAGATGCATC TTGGCCTTTGTTCAAGAAGCAATGATGTTGTGGAGCCAATGCTAAAGCCCCAGTGGTTTGTTAATTGTGATAGTTTGGCAAAGCAAGCTCTTCAAGCAGC TACAGATGGAGAAAATCCAAAGCTTGAATTCATTCCGAAGCAATTTTTGGCTGAATGGAAAAGATGGCTGGGAAACATACAAGACTGGTGCATATCAAGG CAGCTTTGGTGGGGTCACCGCATTCCTGCATGGTATGTTACACTTGAAGATGATGCAGAGAAGGATTTTGGAGTCTACAATGACCACTGGGTAGTGGGTA GGAATGAGGAGGAGGCTTTAGCTGAGGCTAGCCAGAAATTTTCTGGCAAGAAATTTGATATTAGCCAGGATCCAGACGTGTTGGATACCTGGTTTTCTTC TGGTTTATTTCCATTATCTGTGTTGGGATGGCCAGATGATACTGATGATTTAAGAACATTCTATCCAACTTCAGTTCTTGAAACTGGGCATGACATTCTA TTTTTCTGGGTTGCTCGGATGGTGATGCTAGGAATTCAACTGGGAGGCGATGTACCTTTCAGGAAGGTTTTCCTGCACCCTATGGTTCGTGATGCACATG GCCGTAAGATGTCGAAATCTTTGGGAAATGTTATTGACCCACTTGAAGTAATAGATGGGATAAGCCTTGAAGGTCTTCACAAGAGGCTTGAGGAAGGTAA CTTGGATCAGAAAGAGCTGGTTGTAGCAAAAGCTGGACAGAAGCAAGACTTTCCTAATGGTATAGCTGAATGCGGTACAGATGCTCTTCGATTTGCTCTT GTCTCTTATACAGCTCAGTCTGACAAAATAAATTTGGACATCCAACGAGTTGTTGGATATCGCCAGTGGTGTAACAAACTATGGAATGCTGTTCGGTTTG CAATGAGCAAATTTGACATTGATTATACTGCTCCAATAAATTTCAATCTAGAAACCATGCCTTTTAGCTGCAAATGGATACTCTCTGTACTCAACAAAGC TATTTCCAAAGCTGTGTCAGCTTTGGATTCATACGAGCTCTCATATGCTGCCAGTACAGTGTATTCATGGTGGCAATATCAGTTCTGTGACGTTTTCATT GAAGCAATTAAACCCTACTTTGCTGGGGATGATCCAGCATTTGCCTTTGAGAGGAGTTCTGCACAAGAAACTCTTTGGATATGTTTGGATAGTGGACTGA GATTGCTTCATCCATTTATGCCATTTGTTACTGAAGAATTGTGGCAGCGCCTTCCTCCTGTCAGGGGCCATACAAGGAAAGAGTCGATTGTGACATCTGA GTACCCATCAGCTGCAGATGCCTGGACAAATGAAGAGGTGGAATATGAAATGGACCTTATTGAATCTACTGTTAAATGTCTAAGGTCGTTGAGGGCTGAG GTGTTTGAGGACCGAAAAAATGAAAGGCTACCAGCTTTTGCATTTTGCAAAATGAGAGCTGTTGCAGACATCCTCACAAGCCACAACTTCGAGATCTTAA CCCTTGCAAAAAATTTGTCATCTATTCAGGTTCTGTTGAGCGGGGAAGATGCCCCCCCAGCTGGATGTGCGTTTGAGAATGTTAACGAGAATCTTGCAGT CTATCTCAAGGCTGGAGAAAAAGTTAATGCAGAAGTAGAGCTCGTGAAGATGAGAAACAAAATGGATGAGATACAAAAACAACAGGAGAAATTGGAGAAG AAGATTAATGCAGCAGGCTATAAGGAAAAAGTACCTCTTGAGATTCAGGACAAGGATACTGAAAAACTGAGTAAACTTGTTCAAGAAATGGAACTCTTCG AGAAAGAGAGCGAGCGGTTGGAAGCTGTGAAGAGCTTGTAA
AA sequence Show only first row Show all	>Potri.005G087850.1 pacid=42802731 polypeptide=Potri.005G087850.1.p locus=Potri.005G087850 ID=Potri.005G087850.1.v4.1 annot-version=v4.1 MEATPEQLERKKKKEEKAREKELKKLKAAQKEAKFKVQLQSKKKSRREEEEKVVEEEEDYRDPLTPSGQKKRLSAIMPKNYNPSNVEKCWYEWWEASGFF VADANSSKPPFVILFPPPNVTGNLHLGHALTAAIQDTMIRWKRMSGFNALWVPGLDHAGIATQVVVEKKLMRERRSTRHDLGREKFVSEVWKWKHEHGGN ILQQLRRLGASLDWSRECFTMDEKRSKAVIEEFVRLFKEGLIYRDLRLVHWDCTLRTAISDDEVDKIDIKERKFLNIPGYDKQVEFGVLTSFAYPIEGGL GEIVVSTTRVETMLGDTAIAVHPGDERYSHLHGKFANHPFNGRKLPIICDAILVDPSFGTGAVKITPAHDQDDFKAGKRHSLEFIVMFTDDGKINDNGGA EFSGMPRFEAREAVKEALKKKGLYRGAENNEMHLGLCSRSNDVVEPMLKPQWFVNCDSLAKQALQAATDGENPKLEFIPKQFLAEWKRWLGNIQDWCISR QLWWGHRIPAWYVTLEDDAEKDFGVYNDHWVVGRNEEEALAEASQKFSGKKFDISQDPDVLDTWFSSGLFPLSVLGWPDDTDDLRTFYPTSVLETGHDIL FFWVARMVMLGIQLGGDVPFRKVFLHPMVRDAHGRKMSKSLGNVIDPLEVIDGISLEGLHKRLEEGNLDQKELVVAKAGQKQDFPNGIAECGTDALRFAL VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKFDIDYTAPINFNLETMPFSCKWILSVLNKAISKAVSALDSYELSYAASTVYSWWQYQFCDVFI EAIKPYFAGDDPAFAFERSSAQETLWICLDSGLRLLHPFMPFVTEELWQRLPPVRGHTRKESIVTSEYPSAADAWTNEEVEYEMDLIESTVKCLRSLRAE VFEDRKNERLPAFAFCKMRAVADILTSHNFEILTLAKNLSSIQVLLSGEDAPPAGCAFENVNENLAVYLKAGEKVNAEVELVKMRNKMDEIQKQQEKLEK KINAAGYKEKVPLEIQDKDTEKLSKLVQEMELFEKESERLEAVKSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.005G087850 [exp]	0	1
AT1G26310	MADS	CAL1, AGL10, CA...	CAULIFLOWER, AGAMOUS-like 10, ...		Potri.012G100200 [exp]	3.87	0.8437
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	12.24	0.8161
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	13.56	0.7958	XRN4.2
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	13.60	0.8335
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	14.14	0.8347
AT4G19160			unknown protein		Potri.003G033300 [exp]	14.49	0.8129
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	15.42	0.8241
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	18.46	0.8040
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	19.26	0.7901
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	21.42	0.8071

Compare expression of checked genes

Potri.005G087850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.