Plant FIBer expression Database

Potri.005G089000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19970 509 / 7e-180 alpha/beta-Hydrolases superfamily protein (.1)
AT2G18245 225 / 3e-69 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G075400
[exp]
678 / 0 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.007G023000
[exp]
243 / 5e-76 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010171
[exp]
507 / 8e-179 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10017376
[exp]
499 / 6e-176 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10026001
[exp]
213 / 1e-64 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1)
Lus10028314
[exp]
179 / 1e-52 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1)
Lus10041762
[exp]
95 / 3e-23 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1)
Lus10014294
[exp]
0 / 1 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF05705 DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence
>Potri.005G089000.1 pacid=42804699 polypeptide=Potri.005G089000.1.p locus=Potri.005G089000 ID=Potri.005G089000.1.v4.1 annot-version=v4.1
ATGAGTTCCTTGTCTGGAATGCTTCAAAGACCAGTGATTGCAGCAGCTGCAGCAGCTTTAGCTTCTGTTTCTGTTGATTTTTCTGATAAACTCCAATCTT
TTAGATCATTTGATTCTTGTTCTACCTCGGAACAGTCAAGTTCTTTATTGTCTAATTCAGTTCAAGATTCAAACTTTTCATGGGTTTCTCACAGTTCAGT
TTCTAAGCTTGCATCTTCGTCGTTCGTAACTAGGATTCAGATTCCTGTTCCTAAATTAAACTTCGCAGTCCTGGATGTGAGCCAAAATTTTGTTCCCAGT
ACGTTAGGTTTTTCTGTTGCTTCCTCTCCTCTTCTTGTTAGTCTGTATCAGTCTGCGGAGTTGGCCAAAGGACCAAAACCAAGTGCATTTAAAACCACCA
ATATTCCTACATCCTCTCCTGATATTTTGTATAGATGGCATTTGCCCGAGCCTAGTACTATTGATGTTTCTGGGTCTTCTGATTGTTTATCAGAAAAATC
CAGGACAGTGGTAGTTTTGTTAGGGTGGTTAGGATCAAAGCAGAAACATCTAAAGAAATATGCTGAGTGGTACACTTCGAGGGGATTTCATGTCATTACT
TTTACTTTTCCAATGGCCGAGATTCTTTGTTACCAAGTTGGTGGGAAAGCGGAACAGGACATTGACTTGCTTGTGAACCATCTGACTGATTGGTTGGAAG
AGGACAGGAAGAACCTGGTTTTCCATACTTTTAGCAATACCGGATGGTTAACATATGGAGTTATACTTGAGAAGTTTCAGAAACAAGATCCTTCCTTAAT
GGGAAGGATTAGGGGCTGCATAGTGGACTCTGCTCCTGTTGCTGCCCCAGATCCTCAGGTCTGGGCTTCAGGTTTCTCTGCAGCTTTCCTGAAAAATCAT
AGTATTGCAACAAGAGTGCATATGAGCTCAAAAGAATCAGATATGGAGGTACTAGTTGGCAGCAAAACACATGTGGAACCCAAGCCTGCAATAACTGAAT
CAGCTTTATTAGCAATTCTGGAAAAGTTCTTCGATGTGATCTTGAACCTTCCTACAGTGAACAGGAGGCTCTCGGATGTGCTAAGCTTATTATCATCAGG
ACAACCAAGCTGTCCACAGTTATATATTTATAGTTCTGCGGATAGAGTCATTCCTGCAGGGTCTGTGGAATCATTCATAGAGGAGCAGCGAAGAGCGGGG
CATGAGGTCAGGGCCTGCAACTTTGTTTTCACACCTCATGTTGATCATTTCAGAAATGACCCAAAACTCTATACAACCCAGCTCAGCCAGTTTTTAGATG
ACTATGTGCTTACTCGTTGCAAGTGTTCTTAA
AA sequence
>Potri.005G089000.1 pacid=42804699 polypeptide=Potri.005G089000.1.p locus=Potri.005G089000 ID=Potri.005G089000.1.v4.1 annot-version=v4.1
MSSLSGMLQRPVIAAAAAALASVSVDFSDKLQSFRSFDSCSTSEQSSSLLSNSVQDSNFSWVSHSSVSKLASSSFVTRIQIPVPKLNFAVLDVSQNFVPS
TLGFSVASSPLLVSLYQSAELAKGPKPSAFKTTNIPTSSPDILYRWHLPEPSTIDVSGSSDCLSEKSRTVVVLLGWLGSKQKHLKKYAEWYTSRGFHVIT
FTFPMAEILCYQVGGKAEQDIDLLVNHLTDWLEEDRKNLVFHTFSNTGWLTYGVILEKFQKQDPSLMGRIRGCIVDSAPVAAPDPQVWASGFSAAFLKNH
SIATRVHMSSKESDMEVLVGSKTHVEPKPAITESALLAILEKFFDVILNLPTVNRRLSDVLSLLSSGQPSCPQLYIYSSADRVIPAGSVESFIEEQRRAG
HEVRACNFVFTPHVDHFRNDPKLYTTQLSQFLDDYVLTRCKCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19970 alpha/beta-Hydrolases superfam... Potri.005G089000
[exp]
0 1
AT3G61260 Remorin family protein (.1) Potri.002G157700
[exp]
3.46 0.7221
AT4G35160 O-methyltransferase family pro... Potri.013G121300
[exp]
4.12 0.7478 OOMT2.16
Potri.005G086300
[exp]
18.57 0.6990
AT1G73040 Mannose-binding lectin superfa... Potri.012G140001
[exp]
19.07 0.7335
AT1G29850 double-stranded DNA-binding fa... Potri.001G352600
[exp]
22.44 0.6868
Potri.012G085800
[exp]
29.12 0.7103
AT3G58490 AtSPP1 sphingoid phosphate phosphatas... Potri.016G062100
[exp]
33.94 0.6324
AT2G33510 AtCFL1 unknown protein Potri.001G062000
[exp]
34.20 0.6249
AT1G53160 SBP SPL4 squamosa promoter binding prot... Potri.004G046700
[exp]
34.81 0.6632
AT5G55560 Protein kinase superfamily pro... Potri.014G164100
[exp]
86.30 0.6357

Potri.005G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.