Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VIIIA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19960 1896 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 1850 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54280 1256 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT4G27370 1160 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G54560 642 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 640 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G43900 637 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT4G33200 630 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) AT2G33240 629 / 0 ATXID, XID myosin XI D (.1) AT1G17580 627 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074800 [exp] 2244 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.001G407000 [exp] 1281 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 1232 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.006G220000 [exp] 652 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 641 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 637 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 633 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G233100 [exp] 630 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.002G254300 [exp] 627 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017377 [exp] 1857 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10013443 [exp] 1851 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1430 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10038576 [exp] 1151 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10037876 [exp] 1134 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10040996 [exp] 1091 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10022850 [exp] 636 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 627 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 622 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 620 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.005G089200.2 pacid=42802947 polypeptide=Potri.005G089200.2.p locus=Potri.005G089200 ID=Potri.005G089200.2.v4.1 annot-version=v4.1 ATGTTGCAGAAAAAATCTCAGGTCTTGCCTTCTTTCCAGTCGATCAAATCGTTGCCAGTTGATTTTAGGTTTGTTGGTTCGCCGACATCAGAACAATCAG AAAACGCAAATTTGGTAAATAGCAATACAGCCTGTTTGAGTGTTCCTGAAAAAAATGATCTAGAGAATGGTCTTGTCGAGGGAGCTGAGGATAGTGTTGG CAATGATGTCAATGAGGATTCACCTTACAGTCAAGCTGCCATCTTGGTTGAACAAAGACCTTCTGTGGGTGATGAAGATTTGGATACTGTGCCCACACCT TTGCCCTTGGTATCAACATTTCACAGGGAGCGCAGGTGGGCTGACACCAGTTCCTATGCTGCAAAAAAGAAACTTCAATCTTGGTTTCAACTTTCAAATG GGGATTGGGAGCTGGGGAAGATTTTATCAACTTCAGGGACCGAGTCTGTCATTTCCCCTCCAGATGGAAAAGTTTTAAAGGTGAAAACTGAGAGTCTTGT TCCAGCAAATCCTGATATCCTTGATGGTGTAGATGATCTCATGCAACTTAGTTACTTAAATGAGCCATCAGTGCTGTACAATCTTCAGTATAGATACAAC CGTGATATGATTTATACAAAAGCAGGGCCAGTTTTGGTTGCCATCAATCCTTTCAAGGAAGTTCCTTTATATGGAAATAATTACATTGAAGCATATAAGA ATAAATCTATGGAGAGCCCACATGTGTATGCCATTACAGACACGGCCATCCGGGAAATGATACGAGATGAAGTAAATCAATCTATCATTATAAGTGGTGA AAGTGGAGCAGGAAAAACAGAGACAGCGAAGATAGCTATGCAATATCTGGCTGCTCTTGGTGGTGGTAGTGGGATAGAATATGAAATATTGAAAACGAAT CCTATTCTAGAAGCTTTTGGTAATGCAAAGACATTGAGGAATGACAACTCAAGTCGCTTTGGAAAGTTGATTGAAATCCACTTTAGTGAAACTGGAAAAA TATCAGGTGCCAAAATTCAAACATTTTTACTTGAAAAGTCCAGAGTCGTCCAATGCATGGAGGGTGAGAGGTCATATCATATATTTTATCAGCTTTGTGC CGGGGCTTCACCTAAACTTAGAGAGAAAATAAGCTTGAAGATTGCAAGTGAATATAAATATTTGAGACAGAGCAATTGCTACACAATTACTGGTGTCGAT GACGCTGAACGCTTCCGTGGTGTTATGGAAGCTCTGGATATTGTTCATGTCAGTAAGGAAGACCAAGAGAGTGTATTTGCAATGCTTGCTGCAGTACTGT GGTTAGGAAATGTCTCGTTTTCCATTGTTGATAATGAAAATCATGTTGAACCTTTGGCAGATGAAGGTCTAACCACTGTTGCAAAATTGATTGGCTGTAA TGTTGGGGAGCTTAAGCTGGCTTTATCTACTCGCAAAATGAGAGTCGGAAATGATACAATTGTCCAAAAGCTATCCTTATCACAGGCAATAGATACAAGA GATGCTCTGGCCAAGTCAATTTATTCTTGCTTGTTTGATTGGCTTGTTGAACAAGTCAACAAATCACTTGCAGTTGGTAAAAGGAGAACTGGCAGATCCA TCAGCATTCTTGACATTTATGGATTTGAATCATTTGAAAGGAATAGTTTTGAGCAATTCTGCATAAATTATGCAAATGAGAGATTGCAGCAACACTTCAA TCGTCATTTATTCAAGTTGGAGCAGGAGGAATACATACAAGATGGCATTGACTGGACCAAGGTTGATTTTGATGATAACCAGGACTGTCTCAATCTTTTT GAAAAGAAACCTTTGGGGTTATTATCTTTGCTGGATGAGGAGTCCACCTTTCCAAATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTAA ACTCTAATTCTTGTTTCAGAGGAGAGCGAGGCAAAGCCTTCAGTGTCAGCCATTATGCGGGCGAGGTGACTTATGATACAACTGGATTTCTGGAGAAGAA TAGAGACTTATTACACTTGGACTCTATCCAGCTTCTCTCTTCATGTTCATGCCATCTCCCTCAGATATTTGCTTCCAATATGCTTACACAATCTGAGAAA CCTGTAGTCGGTCCTTTATATAAAGCAGGTGGAGCAGATTCACAAAAGCTAAGTGTTGCAACAAAATTTAAGGGCCAACTGTTCCAATTGATGCAACGTC TAGAGAACACAACACCACATTTCATACGTTGTATAAAGCCTAACAACTCGCAATCTCCTGGATCGTATGAGCAAGGACTTGTATTGCAGCAACTGAGATG TTGTGGAGTTCTTGAAGTAGTTCGTATATCAAGGTCTGGATTTCCTACCAGAATGTCACACCAGAAGTTTGCCAGAAGATATGGTTTTCTTCTGCTGGAA AGTGTTGCTTATTCTCAAGATCCACTGAGTATTTCGGTTGCAATTCTTCATCAGTTCGATATCTTGCCAGAGATGTATCAAGTTGGCTACACAAAATTAT TTTTCCGAACAGGACAGATTGGTGTGCTTGAGGATACAAGAAACCACACGCTACATGGTATTTTACGTGTTCAAAGCTGTTTCAGGGGGCACCAAGCTCG TGCTTACCTCAGGGAGCTCAAAAGAGGAATTTGTGTTCTACAGTCATTTGTTCGTGGAGAGAAAATCAGAAAGGAATATGCAGTCTCACAACAAAGACAT AGAGCAGCCGTTGTTATACAAAGACATATCAAAAGCACAATCTGCGGGAAAAAATACAAAGACATGCATCAAGCATCAATCATGATACAATCAGTTATTC GTGGATGGTTGGTGAGAAGATTTTCGGGTGATGTAGGATTATTGAAATCTGGTGCAACCAAGGGCAATGAGTCAGATGAGGTGCTCGTGAAGGCATCATT TCTTGCTGAATTACAGCGACGTGTTCTCAAAGCTGAAGCTGCTCTTAGAGAGAAAGAGGAGGAGAATGACGTCCTTCACCAACGGCTCCAACAGTATGAG AACCGTTGGTCAGAATATGAGTTGAAAATGAAGTCCATGGAAGAAGTGTGGCAGAAACAGATGAGATCCCTACAATCCAGTCTCTCCATTGCAAAGAAGA GCCTAGCCATTGATGATTCTGAGAGAAATTCTGATGCATCTGTCAATGCAAGTGATGAGAGAGAGTTTAGCTGGGATACAGGAAGCAACCATAGGGGTCA AGAAAGTAACAGTGCTAGACCGATGAGTGCAGGCTTGAGTGTTATAAGCCGTATGGCTGAAGAATTTGAGCAGAGGAGTCAAGTGTTTGGTGATGATGCC AAGTTCTTGGTAGAGGTAAAATCAGGTCAGGTTGAAGCAAGTTTGAACCCTGACCGAGAGCTCAGAAGGTTGAAGCAGATGTTTGAAGCTTGGAAGAAGG ATTATGGATCGAGACTACGGGAAACAAAGGTGATTTTGAATAAGCTCGGAACTGAAGAAGGTGCCCTTGACAGGGTGAAAAGGAAGTGGTGGGGAAGGAG GAACAGCACGAGATATACTTAG
AA sequence Show only first row Show all	>Potri.005G089200.2 pacid=42802947 polypeptide=Potri.005G089200.2.p locus=Potri.005G089200 ID=Potri.005G089200.2.v4.1 annot-version=v4.1 MLQKKSQVLPSFQSIKSLPVDFRFVGSPTSEQSENANLVNSNTACLSVPEKNDLENGLVEGAEDSVGNDVNEDSPYSQAAILVEQRPSVGDEDLDTVPTP LPLVSTFHRERRWADTSSYAAKKKLQSWFQLSNGDWELGKILSTSGTESVISPPDGKVLKVKTESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYN RDMIYTKAGPVLVAINPFKEVPLYGNNYIEAYKNKSMESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTN PILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCMEGERSYHIFYQLCAGASPKLREKISLKIASEYKYLRQSNCYTITGVD DAERFRGVMEALDIVHVSKEDQESVFAMLAAVLWLGNVSFSIVDNENHVEPLADEGLTTVAKLIGCNVGELKLALSTRKMRVGNDTIVQKLSLSQAIDTR DALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLNLF EKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEK PVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLENTTPHFIRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE SVAYSQDPLSISVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTRNHTLHGILRVQSCFRGHQARAYLRELKRGICVLQSFVRGEKIRKEYAVSQQRH RAAVVIQRHIKSTICGKKYKDMHQASIMIQSVIRGWLVRRFSGDVGLLKSGATKGNESDEVLVKASFLAELQRRVLKAEAALREKEEENDVLHQRLQQYE NRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEREFSWDTGSNHRGQESNSARPMSAGLSVISRMAEEFEQRSQVFGDDA KFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILNKLGTEEGALDRVKRKWWGRRNSTRYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.005G089200 [exp]	0	1	Pt-VIIIA.1
AT4G03340			Core-2/I-branching beta-1,6-N-...		Potri.019G104600 [exp]	10.09	0.8146
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	11.91	0.8210
AT5G09890			Protein kinase family protein ...		Potri.002G125800 [exp]	13.07	0.7458
AT3G60380			unknown protein		Potri.014G045300 [exp]	20.49	0.8073
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	21.90	0.8093
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	22.67	0.8172	SHMT3
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	36.26	0.8084
AT1G20670			DNA-binding bromodomain-contai...		Potri.002G009100 [exp]	40.06	0.7160	BRD901
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	43.24	0.7882
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	43.35	0.7512

Compare expression of checked genes

Potri.005G089200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.