Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37520 130 / 2e-35 Peroxidase superfamily protein (.1.2) AT4G37530 127 / 3e-34 Peroxidase superfamily protein (.1.2) AT5G67400 126 / 6e-34 RHS19 root hair specific 19 (.1) AT5G14130 126 / 7e-34 Peroxidase superfamily protein (.1) AT4G17690 124 / 4e-33 Peroxidase superfamily protein (.1) AT5G47000 121 / 5e-32 Peroxidase superfamily protein (.1) AT3G49960 115 / 1e-29 Peroxidase superfamily protein (.1) AT2G34060 114 / 3e-29 Peroxidase superfamily protein (.1) AT2G18980 112 / 1e-28 Peroxidase superfamily protein (.1) AT4G30170 106 / 1e-26 Peroxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074700 [exp] 196 / 8e-61 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 132 / 4e-36 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 122 / 2e-32 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 120 / 1e-31 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 119 / 2e-31 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.004G052100 [exp] 108 / 4e-27 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.018G089900 [exp] 107 / 6e-27 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 105 / 3e-26 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G351000 [exp] 101 / 1e-24 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032035 [exp] 119 / 4e-31 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10012540 [exp] 114 / 3e-29 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10004234 [exp] 114 / 4e-29 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 114 / 4e-29 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10010716 [exp] 113 / 4e-29 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10013955 [exp] 106 / 5e-26 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10011079 [exp] 105 / 7e-26 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10015074 [exp] 98 / 3e-23 AT2G37130 498 / 5e-179 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 96 / 2e-22 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10029543 [exp] 96 / 2e-22 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G089400.1 pacid=42803063 polypeptide=Potri.005G089350.1.p locus=Potri.005G089400 ID=Potri.005G089400.1.v4.1 annot-version=v4.1 ATGGCTAAAGCCTTGTTTTTGGTTCTTCAATTTCTTTCCCAGGATGGTCACATCTTTGATGTAGTTGCTTACAAGTTTTCAGAAGCTCCTGAGTCTGCTG CTGGCGCTCTACGAATCTTCTCCCAAGACTGCTTTGTTGAGGGTTGTGATGCATCAGTGATCAAGCAACACTGTAAAATTAGAAAGGGATGCAGAAATAA ACCTGTCTTTATCTGGAAATGTTTTTTACTTGCTATTTTTTTAGCCAAGAAAGCTGTTGAATCACATTGTCCAAGAGTGGTTACTTGTGCAGATGTCTTG GCAATTGTTACAAGAGACAGTTACAATGAGCCCCTTAGGTTTGAAGTGCAAATGGGAAGAAGAGATGGGCCAGATGGCCTTGTCTCTGAGGCTTCAAGAG TGGCGGGAAACATTCTTCACGCGAATGACAGTCTCTCAAGTAACCTCACTCTTCCAATCCAAAGGGTTATCTATCCTCGACATGGAAGCCCACTCGGTCG GTGCCTCTCGCTGCTAGGAGTTATGTCCAGAATTTATAGCTGCAGCCTGTCATTTGACGTTGACCCAAACATGAACCAAAACCATGCTAAAGAATTTCGT GAAACATTTCCTGAAGAGAATTTTGATCCAACTGTTCTTGCTCTTCAGAAGGGCTTTGGCTTGCTAGGAACGGATCGGTTGGCTTCGGACCCAAGAACTC AGGTGTATGTGAATTTAATGACCAACTATCAAGAGCTATTTTACAGTCACTTTATCACAGCCACGATCAGGTTAGGTATTACTGGGGTTAAAACAGGGAA CGAGGGAGAGATCAGGCAAGATTGTGGATCATTTAATAATAACAGTGTTTACTCTATTGCCAACAAGCAGACCATGTATGGGTTTGTTCTGTAA
AA sequence Show only first row Show all	>Potri.005G089400.1 pacid=42803063 polypeptide=Potri.005G089350.1.p locus=Potri.005G089400 ID=Potri.005G089400.1.v4.1 annot-version=v4.1 MAKALFLVLQFLSQDGHIFDVVAYKFSEAPESAAGALRIFSQDCFVEGCDASVIKQHCKIRKGCRNKPVFIWKCFLLAIFLAKKAVESHCPRVVTCADVL AIVTRDSYNEPLRFEVQMGRRDGPDGLVSEASRVAGNILHANDSLSSNLTLPIQRVIYPRHGSPLGRCLSLLGVMSRIYSCSLSFDVDPNMNQNHAKEFR ETFPEENFDPTVLALQKGFGLLGTDRLASDPRTQVYVNLMTNYQELFYSHFITATIRLGITGVKTGNEGEIRQDCGSFNNNSVYSIANKQTMYGFVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37520			Peroxidase superfamily protein...		Potri.005G089400 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	8.94	0.9277
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.002G060800 [exp]	19.02	0.9230
AT1G75580			SAUR-like auxin-responsive pro...		Potri.005G237200 [exp]	22.53	0.9101	SAUR31
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	25.63	0.9137
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140600 [exp]	34.49	0.9083
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	34.72	0.8977
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.010G167500 [exp]	34.92	0.9022
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	35.49	0.9068
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034100 [exp]	37.64	0.9018
AT1G73680		ALPHADOX2 ,ALPH...	alpha dioxygenase (.1.2)		Potri.012G049500 [exp]	39.06	0.9060

Compare expression of checked genes

Potri.005G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.