Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08335 285 / 3e-99 ATICMTB, ATSTE14B ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) AT5G23320 271 / 9e-94 ATICMTA, ATSTE14A, ATPCM LPHA-CARBOXYL METHYLTRANSFERASE, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, homolog of yeast STE14 A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074500 [exp] 350 / 5e-125 AT5G08335 298 / 4e-104 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037842 [exp] 294 / 2e-102 AT5G08335 293 / 2e-102 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) Lus10030398 [exp] 289 / 9e-100 AT5G08335 285 / 2e-98 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF04140 [poplar] [flax] ICMT Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Representative CDS sequence Show only first row Show all	>Potri.005G089500.1 pacid=42805085 polypeptide=Potri.005G089500.1.p locus=Potri.005G089500 ID=Potri.005G089500.1.v4.1 annot-version=v4.1 ATGACAGAAATTTTTGGATATACGGCTTGCAGACAGTTATCCCAGATGATTCTGGCTGTTTTCTTTTTTCATGGTTCTGAATACGTTTTAGCGGCTGCTA TTCATGGGAGATCAAAAGTTAGTCTTAGTTCACTTTTGATCAGCAAAGCTTATGTGTTTGCGATGATGTTTTCATTGCTCGAATATGTCGTTGAGATTGC TTTATTTCCTGGGTTGAAGGAATATTGGTGGGTAAGCAATTTAGGTCTCGTGATGGTTACAATTGGAGAGATTATTCGGAAACTAGCGATTATAACAGCT GGACTAGCATTCACGCATCTGATTAAGGTTTATCATGAGGAGCACCATAATTTGATTACTCATGGAATCTATAGGTTTTTTCGCCATCCATCATATACTG GTTTTTTAATCTGGTCAGTTGGCACTCAGATAATGTTATGTAATCCCATATCGACAATTGGATTTGCAATTGTTGTCTGGCGCTTCTTTTCTCAACGGAT ACCGTACGAAGAGTTTTTCTTGAGGCAGTTTTTTGGGTCGAAGTATGAGGAATATGCTTTGCGAACTCCTTCTGGGGTTCCTTTTGTGAAGTGA
AA sequence Show only first row Show all	>Potri.005G089500.1 pacid=42805085 polypeptide=Potri.005G089500.1.p locus=Potri.005G089500 ID=Potri.005G089500.1.v4.1 annot-version=v4.1 MTEIFGYTACRQLSQMILAVFFFHGSEYVLAAAIHGRSKVSLSSLLISKAYVFAMMFSLLEYVVEIALFPGLKEYWWVSNLGLVMVTIGEIIRKLAIITA GLAFTHLIKVYHEEHHNLITHGIYRFFRHPSYTGFLIWSVGTQIMLCNPISTIGFAIVVWRFFSQRIPYEEFFLRQFFGSKYEEYALRTPSGVPFVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Potri.005G089500 [exp]	0	1
AT1G32460			unknown protein		Potri.003G089100 [exp]	2.00	0.7739
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.018G061050 [exp]	43.69	0.7356
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	95.95	0.6738
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	174.01	0.6753
AT5G01470			S-adenosyl-L-methionine-depend...		Potri.006G100100 [exp]	197.42	0.6833

Compare expression of checked genes

Potri.005G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.