Plant FIBer expression Database

Potri.005G089700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23300 751 / 0 PYRD pyrimidine d (.1)
AT3G17810 44 / 0.0002 PYD1 pyrimidine 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G074201
[exp]
407 / 3e-142 AT5G23300 411 / 3e-144 pyrimidine d (.1)
Potri.007G074101
[exp]
323 / 3e-110 AT5G23300 282 / 1e-94 pyrimidine d (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024096
[exp]
662 / 0 AT5G23300 672 / 0.0 pyrimidine d (.1)
Lus10041623
[exp]
654 / 0 AT5G23300 650 / 0.0 pyrimidine d (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01180 DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence
>Potri.005G089700.1 pacid=42804414 polypeptide=Potri.005G089700.1.p locus=Potri.005G089700 ID=Potri.005G089700.1.v4.1 annot-version=v4.1
ATGGCTTCAAGGGCTTCAAGAAGGTTACTTAAAGATTTTTTGCTCAAAAGGGTTACTTCAACTCCTGTTAGTAGTGTTAGACATTTCTCGTCTTCTTCTT
CATCAGAAACTGCTCCTAAAATTCCTCATTTCTCAAAGAAGGGGAGGTTGTTAACAGGTGCGACCATAGGACTGGTTATAGCTGGAGGAGCTTATGTTAG
TACAGTGGATGAAGCAACTTTCTGCGGTTGGCTATTCAATGCAACGAAACTCGTGAATCCATTTTTTGCTCTTCTAGATGCTGAGTTTGCTCATAAGCTT
GCTGTCTCAGCTGCTGCTCGTGGTTGGGTTCCGAGGGAGAAGAGGCCTGATCCATCAGTTTTAGGACTGGAAGTTTGGGGAAGGAAATTCTCCAACCCTA
TTGGTCTAGCTGCTGGCTTTGATAAAAATGCTGAGGCTATTGATGGCTTGCTCGGGTTAGGTTTTGGCTTTGTAGAAGTCGGCTCTGTTACCCCTGTTCC
ACAAGAGGGTAATCCAAAGCCACGAATTTTTAGATTGCGCCAGGAAGGTGCAATTATCAATCGTTGTGGATTTAATAGTGAAGGCATTGTAGCTGTTGCA
AAGCGATTGGGTGCACAACATGGGAAACGGAAGTTGGATGAAACTTCAAGCGCTTCATCTACCTCGAACAATGATGTCAAACACGGAGGCAAAGCTGGCC
CTGGCATTCTCGGGGTCAATCTGGGGAAGAACAAAACAAGTGAAGATGCTGCTGCAGATTATGTACAAGGGGTTCATTCATTATCCCAATATTCTGATTA
CTTGGTAATTAATGTGTCATCACCCAATACTCCTGGATTGCGTATGCTTCAGGGAAGAAAGCAGTTGAAGGACCTTGTTAAGAAGGTCCAAGCTGCTCGT
GATGAAATGCAATGGGGTGAGGAGGGTCCTCCTCCATTGCTTGTGAAAATTGCACCTGACTTGTCAAAGGAAGACCTTGAAGACATTGCAGCAGTTGCTC
TTGCACTCCGCTTGGATGGTCTGATTATATCAAATACAACCATTTCAAGACCAGATTCTGTAAACAAATCCCCAGTGGCCGAGGAAACTGGTGGCTTGAG
TGGGAAACCTCTCCTCAATCTGTCTACCAATATCTTAAAGGAGATGTTTATTTTGACAAGGGGAAAGATTCCTTTGATAGGCTGTGGGGGTGTTTTCAGT
GGTGAGGATGCATACAAAAAAGTAAGAGCTGGAGCAACTCTTGTTCAGCTTTATACAGGATTTGCCTACGGCGGACCTGCCCTAATTCCTCGAATAAAGG
CTGAGCTGGCCGAGTGCTTAGAAAGGGATGGTTTCAAGTCCATCTCGGAGGCAGTTGGTGCAGATTATAGGTAG
AA sequence
>Potri.005G089700.1 pacid=42804414 polypeptide=Potri.005G089700.1.p locus=Potri.005G089700 ID=Potri.005G089700.1.v4.1 annot-version=v4.1
MASRASRRLLKDFLLKRVTSTPVSSVRHFSSSSSSETAPKIPHFSKKGRLLTGATIGLVIAGGAYVSTVDEATFCGWLFNATKLVNPFFALLDAEFAHKL
AVSAAARGWVPREKRPDPSVLGLEVWGRKFSNPIGLAAGFDKNAEAIDGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVA
KRLGAQHGKRKLDETSSASSTSNNDVKHGGKAGPGILGVNLGKNKTSEDAAADYVQGVHSLSQYSDYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAAR
DEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALRLDGLIISNTTISRPDSVNKSPVAEETGGLSGKPLLNLSTNILKEMFILTRGKIPLIGCGGVFS
GEDAYKKVRAGATLVQLYTGFAYGGPALIPRIKAELAECLERDGFKSISEAVGADYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G23300 PYRD pyrimidine d (.1) Potri.005G089700
[exp]
0 1
AT3G49080 Ribosomal protein S5 domain 2-... Potri.012G144700
[exp]
1.73 0.8604
AT5G52820 WD-40 repeat family protein / ... Potri.009G058000
[exp]
2.82 0.8499
AT5G09270 unknown protein Potri.007G102600
[exp]
6.32 0.8140
AT2G31060 EMB2785 EMBRYO DEFECTIVE 2785, elongat... Potri.013G123700
[exp]
6.48 0.8168
AT3G16810 APUM24 pumilio 24 (.1) Potri.010G005600
[exp]
6.70 0.8405
AT3G04020 unknown protein Potri.010G205900
[exp]
6.92 0.8198
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.016G036100
[exp]
7.74 0.8265
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.011G032400
[exp]
8.36 0.8229
AT1G20370 Pseudouridine synthase family ... Potri.005G247000
[exp]
9.94 0.8125
AT2G34570 MEE21 maternal effect embryo arrest ... Potri.004G197200
[exp]
13.41 0.7915

Potri.005G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.