Plant FIBer expression Database

Potri.005G089750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G089750.1 pacid=42803096 polypeptide=Potri.005G089750.1.p locus=Potri.005G089750 ID=Potri.005G089750.1.v4.1 annot-version=v4.1
ATGCCTTCCTACTCACCCCACAACATCGTGCCTTCCTTCTTTTTTTTCTTTTTACACTTCAGTCCTTGTTTCTTCTTCTTTCATCCACTTTGCTCACTAA
ATTTTTGTGTTCTTTTCTTTCTTTCTTTCTTTTATGAAAAATCTTTAGAAAAAGTGGATCAAAATATATTTGTTTTTCATGAAATCTTGAGGTTTGTACT
TTGTTGTTGTGGTGATGAACATGAAGGTGGTAATGACGATGAAGCTTCACACGGGCTGTTTTCAGGTTCAGGGTCAAGTAATTCATCAAATGTTGGAACA
CGATATGTTTGGTCTTGGGACAGGGTATTTTGGGAGGCTTTCAATTCCAGTGCCTTCAAGGAGAGTTAA
AA sequence
>Potri.005G089750.1 pacid=42803096 polypeptide=Potri.005G089750.1.p locus=Potri.005G089750 ID=Potri.005G089750.1.v4.1 annot-version=v4.1
MPSYSPHNIVPSFFFFFLHFSPCFFFFHPLCSLNFCVLFFLSFFYEKSLEKVDQNIFVFHEILRFVLCCCGDEHEGGNDDEASHGLFSGSGSSNSSNVGT
RYVWSWDRVFWEAFNSSAFKES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G089750
[exp]
0 1
AT3G04670 WRKY ATWRKY39, WRKY3... WRKY DNA-binding protein 39 (.... Potri.005G055300
[exp]
3.87 0.7633 WRKY39.1
AT4G02590 bHLH bHLH059, UNE12 unfertilized embryo sac 12, ba... Potri.005G053500
[exp]
9.59 0.7486
AT5G07050 nodulin MtN21 /EamA-like trans... Potri.001G032500
[exp]
12.44 0.7001
AT2G44300 Bifunctional inhibitor/lipid-t... Potri.001G232000
[exp]
17.32 0.6712
AT5G13250 RING finger protein (.1) Potri.001G062700
[exp]
21.90 0.6644
AT1G08320 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding pr... Potri.009G164300
[exp]
30.96 0.6846
AT3G63250 HMT-2, ATHMT-2 ... HOMOCYSTEINE METHYLTRANSFERASE... Potri.002G049800
[exp]
31.93 0.6126 HMT1,SMTA.1
AT5G09850 Transcription elongation facto... Potri.001G307600
[exp]
32.07 0.6586
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Potri.005G082000
[exp]
36.86 0.6781 STGA1.3
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Potri.006G128700
[exp]
51.24 0.6543

Potri.005G089750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.