Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 215 / 2e-58 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074070 [exp] 730 / 0 AT1G05460 211 / 2e-57 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 223 / 2e-61 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 212 / 8e-58 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010175 [exp] 444 / 2e-146 AT1G05460 226 / 4e-63 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017379 [exp] 434 / 1e-142 AT1G05460 212 / 2e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010577 [exp] 119 / 2e-27 AT1G05460 610 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G089800.1 pacid=42805336 polypeptide=Potri.005G089800.1.p locus=Potri.005G089800 ID=Potri.005G089800.1.v4.1 annot-version=v4.1 ATGTCTGGGTGTCTTGAATTCCTTAAGTGTGTACTTTGTTGTGTACAAGAACGTGAAGAAGATCCCTATGTTGTATTGGGTTCAAGGTCAAGAAATAATT CATCAGATGTTGGATCAAGTTGCTTTAGGTCTGTGGAAAGAATCAATGATAGATTTCAGAGTTTCTATAGTCGCCCATATGCACCCATATATTCCGATGA TCTACCTGCATCTCCCTCTGCATTAACTCAATCTTCATCAAAATTGTTCCCCCCTTCAGCACCTCCATGGCCTGAACCCCCAGCATCATCTTCTAATCAA TCTCAATCTTCACGTGCACCGGCAACAGTTCTTTCTAGACCCTCTCCATTTCAACCAGTACCTTCAACAACTGCATCGAAACCATCACCTGATCAAGCGA CAACATTGTCATTCAAATCATCTCTATTACCACCTCCACCTTCAACTTCTTCATCAAAATCATCCCATCAAGATCCTATTCCTGCTTTCCATCCATCTCC ATCTCCTAAACCACTCCCATCATTTCTTAAACCGCCAACTTCATCTTCTAATCAATCTCAATCTTCACGTGTACCGGCAACAGTTCTTTCTAGACCCTCT CCATTTCCATTAGTACCTTCAACAACTTCATCGAAACCATCACCTCAAGCTACAACATTGTCATTCAAATCATCTCCATTTCCACCTCCACCTTCAACTT CTTCATCAAAATCATCCCATCAAGATCCTAATCCTGCTTTCCATCCATCTCCATCTCCTAAACCACTCCCATCATTTCTTAAACCCCCAGCATCATCTTC TAAACCCTCTCCATCTTCATCTAAAGCATCCCCATCTTCACGGCCAGGACCATCTTCATCATCCTCTAAGCAGCCTCCATCCTTCAAACCAACTCTATCT CTGGCTTCCCCAAATTTAATTAATGAGCAGACAAAAGTCAGCTACTCGTTGGTTCAAAAGGTTATGTCACCTATTTACGCGGTTCCCAAGGATATTGAGG ACTTGATCAAGAGAGACATAGTGCCTGAAGTTCTTAATGAAATGTTGTCTCCTTCCACATACAAGGATTATTTTGCTGCCCTTCTGTATGCCGAGGACTT CTACATTGAGAAATGGAGTAAATTTAAATTGAAGAATATTGCTCTCAAGTTGAAAGATGCAGCAATCATTAAGAAGCGTGGCAGGAATGAATACTTCGGT GAAAGTCATGAAAAGGATAATAAAACCTTTGTAGAATTTGAGATTGACTCATGTCGTGAGAAGCGGCCATTTCTTTTGTCCAGAGACTTTGCCTTTGCAC GACCTTCAAGTCAAAAAACCGAGCCATATCAGGGTGTTATCTATCGCGTGGTGAGGAGCACTATTGTACTGGTTGAATTTGGCGAAGATTTTCTTTTGCA GCACCATTCAACCCGTGAATATGATGTTAGCTTCTCATTTAACAGAGTTTGTTTGAAAAGGGCTCACCAAGCGATAGAAGCCGCTTCAGATCCTTCATTT AAAAATTTCCTTTTCCCTAATTTTGTCCACAGAAAGAGTATCCCAACCTCTACACCTCTCCATTTTATCAATCATAAACTTGATGCGTATCAAAGATCTG CTGTTCACGAGATTTTGAGCTTTCGAGGACCACCACCTTATCTTGTTGAAGGTCCACTTTGTTCGAAAGAGTATTCAAAACAACTATCAAGGATTGGATT GGTGGTCCAGGAAGCAGTACTCCAAATTTATCAAAGTTCATCAAAGCATCGGATTCTTATATGTGCACCCATTAACAGAACATGTGATGTTCTGATGCAA AGCTTAAAAATTGATATTCCAGAGTCGGATATGTTTCGAGCAAATGCTGCTTTCCGGGAGATAGATGGGGTGCCTATTGACATCCTAACATCGTGTGTGT ACAAAAGGGATTGTTTTACTTGTCCATCTATTCGGGAACTCAGGAAATTTAGAGTAATCTTGTCTACTTTTGTTAGTAGCTTTCGGCTGCATAATGAAGG GATAGTTGCTGGCCATTTTAGCCATATTTTTTTGGTGAATGCTTCATCAGCTACTGAGCCAGAAGCAATGGTGGCTTTGGCTAATTTGGCTAGTGAGAAT ACAGCAGTGATAGTTACTGGTGCTCCAGGAAACCATTCAGGCTGGGTTCGTTCCAATATTGCAAGGGAGAATGGGCTAATGACATCCTACTTCGAAAGAC TTCGTGATAGCAAGCCATACTGGAATTCACATCCTAAGTTTATCATGCAGCTGGTTGATCATCCCGAGAGTAAATCAGTTGATTCTTATAGCTATGCCCA TGAATCAGTATCGTATGACTAA
AA sequence Show only first row Show all	>Potri.005G089800.1 pacid=42805336 polypeptide=Potri.005G089800.1.p locus=Potri.005G089800 ID=Potri.005G089800.1.v4.1 annot-version=v4.1 MSGCLEFLKCVLCCVQEREEDPYVVLGSRSRNNSSDVGSSCFRSVERINDRFQSFYSRPYAPIYSDDLPASPSALTQSSSKLFPPSAPPWPEPPASSSNQ SQSSRAPATVLSRPSPFQPVPSTTASKPSPDQATTLSFKSSLLPPPPSTSSSKSSHQDPIPAFHPSPSPKPLPSFLKPPTSSSNQSQSSRVPATVLSRPS PFPLVPSTTSSKPSPQATTLSFKSSPFPPPPSTSSSKSSHQDPNPAFHPSPSPKPLPSFLKPPASSSKPSPSSSKASPSSRPGPSSSSSKQPPSFKPTLS LASPNLINEQTKVSYSLVQKVMSPIYAVPKDIEDLIKRDIVPEVLNEMLSPSTYKDYFAALLYAEDFYIEKWSKFKLKNIALKLKDAAIIKKRGRNEYFG ESHEKDNKTFVEFEIDSCREKRPFLLSRDFAFARPSSQKTEPYQGVIYRVVRSTIVLVEFGEDFLLQHHSTREYDVSFSFNRVCLKRAHQAIEAASDPSF KNFLFPNFVHRKSIPTSTPLHFINHKLDAYQRSAVHEILSFRGPPPYLVEGPLCSKEYSKQLSRIGLVVQEAVLQIYQSSSKHRILICAPINRTCDVLMQ SLKIDIPESDMFRANAAFREIDGVPIDILTSCVYKRDCFTCPSIRELRKFRVILSTFVSSFRLHNEGIVAGHFSHIFLVNASSATEPEAMVALANLASEN TAVIVTGAPGNHSGWVRSNIARENGLMTSYFERLRDSKPYWNSHPKFIMQLVDHPESKSVDSYSYAHESVSYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	0	1
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	6.24	0.7114
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	6.85	0.7689
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	7.74	0.7267	RKF1.1
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	8.48	0.7113
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	8.66	0.7092
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.001G166800 [exp]	11.00	0.6926
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	14.69	0.6963
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	19.74	0.6815
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	22.18	0.6910
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	24.73	0.6689

Compare expression of checked genes

Potri.005G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.