Plant FIBer expression Database

Potri.005G090000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04190 75 / 3e-14 PKS4 phytochrome kinase substrate 4 (.1)
AT2G02950 47 / 2e-05 PKS1 phytochrome kinase substrate 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G074056
[exp]
801 / 0 AT5G04190 102 / 2e-23 phytochrome kinase substrate 4 (.1)
Potri.015G062600
[exp]
42 / 0.0008 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040995
[exp]
296 / 1e-93 AT5G04190 117 / 2e-28 phytochrome kinase substrate 4 (.1)
Lus10013442
[exp]
174 / 8e-50 AT5G04190 67 / 2e-12 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence
>Potri.005G090000.2 pacid=42804207 polypeptide=Potri.005G090000.2.p locus=Potri.005G090000 ID=Potri.005G090000.2.v4.1 annot-version=v4.1
ATGGAAAGATCGAAAGTGATGAAAACTATTACTGCAGGAAACATAGCTCCGCAGCCCATTTTTGGCATCATTGAATCTACTCATCCTTGCATTTCTTATC
CACAGAAATCAACTGTTAGAGATGCATCCTTTTCTTCCTATCTCAGACCGATGCCAGAACAGATTACTCAAGTTGATGATTCTGAGATAAGCATTTTCGA
TGCACAGAAGTACTTCAATGAAAGTGGCGGTGACACCAAATTGAGCAGGAGAGTTTCTCCAGTTAATGCTAAACTTGAACGCGTATCCGAGCGATATGAT
TTCTCTTCGCTTCCTAGATTGTCGTCTGCCTCGTCTTCGGTTGATGGATATGGCAGGAATTATAGAGCTCGTTCTTTCCACGCAACACCAACCGCTTCAT
CTGAAGCTAGTTGGAATAGCCAGGCTGGTTTATTGTCTAATCCACCAGGTGCTATCGCTGTCTCTATGCGAAACCCACCTCGAAATGATGACAAGAGAAA
AGGGTCTGGTACAAAATGGCTTCTTAGGAGAAAATGTCCATGTTCAGGTAAGAAATCTGTTCAAATCGAGGAAAAGCTATCAGAACCAAGAACCCTATCA
CGGATAAGTCACACTAAAGGACTCTCTGTGGATCTCAAAAAGCAGATTCAGATTCCTACCCCTGTAGAAAATCCTATTGAAAAAAGTTCGGCTACACCGG
ACTGGCTCGAAAGACGTGAAGTAATCCCCAGTTCTCATAGAATGTCGGCAGATGGCAAGCTCGAAAGGCGTGATGCGATTCCTAATACTCATCGAATCTT
GGCAGACAACAGCCGATTTCCTTCAGGCTTAAGCCACCAACGTGTAGTGGCCTCGGCAAGACCATTTAGTACTGATACTACTGCTGGGTTCAGTTTTCCT
ATACTGAGCCAAACCCCACCTCCCATGAAACTGGTGTTGCCATCAACTACATATAACCCTCCTCTTGAGGATCCACCGCGCGAGTCGTTGGAAGTTTTTC
GGCCAGCTGAAGGTCCTATTCCAACAAAGTCAACTTCTGATCTTCAGCGACGTCAAAGCTTCACAGTCATGGACGACGATATGGCAAGTGATGCAAGTTC
AGACTTGTTCGAGATTGAGAGTTTCTCAACTCAGACAACATCATATGCAATGTATCCTAATCATCGCGATTCCCTTGATGATGCTCCTAGCTTTAACACA
AGGCGATTAGCTGCAACAAATGGAGGGGATTTGTATTGTAGACGAAGTCTTGATGAACCTAGAACACCATCAATTGCACCAACAGAATGTTATGCGCCAA
GCGAGGCTAGCATAGACTGGAGTGTGACAACAGCAGAAGGGTTTGACAGAGGAAGTGTTACTAACTTCTCAGTCAGTGCATCAGAAGTTGATGAAACGGC
AATGATGCGTGGCCGCGAGGATGAAAAGAATAGCGGCGGTGGGAAGAACAGAGGAGGGAATGGAGCGTTGTTGATGAGTTGTCGGTGCGAGAAGGCGGTT
AGTGTAGGGCCACATCCGGTGAAATGTGTGCCTGAAGAGGGACAAAGAGTAGCAAGCTCCACAGTGAGGCATGTGGGAAGTAGGCCAGCTGTGATGAACA
AGCCACCACTTGCTAGGTTTCACTCTGCTCGATTGTCTTTACCCTTTGCAACATAG
AA sequence
>Potri.005G090000.2 pacid=42804207 polypeptide=Potri.005G090000.2.p locus=Potri.005G090000 ID=Potri.005G090000.2.v4.1 annot-version=v4.1
MERSKVMKTITAGNIAPQPIFGIIESTHPCISYPQKSTVRDASFSSYLRPMPEQITQVDDSEISIFDAQKYFNESGGDTKLSRRVSPVNAKLERVSERYD
FSSLPRLSSASSSVDGYGRNYRARSFHATPTASSEASWNSQAGLLSNPPGAIAVSMRNPPRNDDKRKGSGTKWLLRRKCPCSGKKSVQIEEKLSEPRTLS
RISHTKGLSVDLKKQIQIPTPVENPIEKSSATPDWLERREVIPSSHRMSADGKLERRDAIPNTHRILADNSRFPSGLSHQRVVASARPFSTDTTAGFSFP
ILSQTPPPMKLVLPSTTYNPPLEDPPRESLEVFRPAEGPIPTKSTSDLQRRQSFTVMDDDMASDASSDLFEIESFSTQTTSYAMYPNHRDSLDDAPSFNT
RRLAATNGGDLYCRRSLDEPRTPSIAPTECYAPSEASIDWSVTTAEGFDRGSVTNFSVSASEVDETAMMRGREDEKNSGGGKNRGGNGALLMSCRCEKAV
SVGPHPVKCVPEEGQRVASSTVRHVGSRPAVMNKPPLARFHSARLSLPFAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04190 PKS4 phytochrome kinase substrate 4... Potri.005G090000
[exp]
0 1
AT3G57650 LPAT2 lysophosphatidyl acyltransfera... Potri.016G053000
[exp]
9.48 0.7557
AT4G01900 PII, P11, GLB1 GLNB1 homolog (.1) Potri.002G191300
[exp]
14.00 0.7378 Pt-GLB1.1
AT4G29680 Alkaline-phosphatase-like fami... Potri.018G066600
[exp]
14.83 0.7303
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Potri.008G138800
[exp]
32.01 0.7054
AT4G04830 ATMSRB5 methionine sulfoxide reductase... Potri.008G198600
[exp]
40.00 0.7029 PtrMsrB3
AT2G47490 ATNDT1 NAD+ transporter 1, ARABIDOPSI... Potri.014G125600
[exp]
74.99 0.7142
AT2G28080 UDP-Glycosyltransferase superf... Potri.004G214100
[exp]
79.74 0.6952
AT1G47750 PEX11A peroxin 11A (.1) Potri.002G134000
[exp]
132.15 0.6773
AT5G38220 alpha/beta-Hydrolases superfam... Potri.004G097300
[exp]
133.76 0.6436
AT1G76560 CP12-3 CP12 domain-containing protein... Potri.002G002700
[exp]
141.49 0.6426

Potri.005G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.