Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23280 170 / 8e-52 TCP TCP7 TCP family transcription factor (.1) AT5G08330 152 / 4e-45 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT1G72010 114 / 3e-29 TCP TCP22 TCP family transcription factor (.1) AT1G58100 109 / 2e-27 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G35560 104 / 5e-26 TCP TCP23 TCP family transcription factor (.1) AT3G47620 103 / 5e-25 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G69690 100 / 2e-24 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT3G27010 97 / 3e-23 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT5G51910 96 / 4e-23 TCP TCP19 TCP family transcription factor (.1.2) AT2G45680 94 / 4e-22 TCP TCP9 TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074028 [exp] 273 / 5e-92 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.013G110700 [exp] 113 / 7e-29 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.019G081800 [exp] 112 / 2e-28 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.004G222100 [exp] 108 / 1e-26 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2) Potri.011G055500 [exp] 102 / 1e-24 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 101 / 2e-24 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.017G068748 [exp] 99 / 6e-24 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 99 / 7e-24 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G060000 [exp] 97 / 1e-23 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010177 [exp] 139 / 2e-39 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10037190 [exp] 102 / 2e-24 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10032022 [exp] 100 / 2e-24 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 99 / 2e-24 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037046 [exp] 95 / 2e-24 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10041328 [exp] 85 / 2e-19 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10013814 [exp] 81 / 4e-18 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008621 [exp] 75 / 2e-15 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 66 / 2e-12 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008444 [exp] 49 / 9e-08 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.005G090300.3 pacid=42804133 polypeptide=Potri.005G090300.3.p locus=Potri.005G090300 ID=Potri.005G090300.3.v4.1 annot-version=v4.1 ATGTCAGACAACAGTGGTGCTGTCAATAACGGAGCTTTGATAGACCCACAAAGAAACCAGCCGCCGGGAGGTGGTGGAGGAGGAGGAGCTACTAATGGAG CTTTAGCTGTTAAAAAACCACCTTCTAAAGACCGTCATAGCAAGGTTGATGGTCGTGGAAGGAGGATTCGGATGCCGATCATTTGTGCTGCTAGAGTTTT TCAGTTGACTCGTGAATTGGGTCACAAGTCTGATGGACAAACTATCGAATGGCTTCTTCGTCAAGCTGAGCCTTCGATTATTGCTGCTACTGGGACCGGA ACTACTCCTGCTAGTTTTTCTACTGTTTCTGTTTCGGTTCGTGCTGGTGGTAATTCTAATTCAATATCTTCGCTTTCCAGCAATAATGTTCATTCAGCTG CTTCTTTGGACCATAAGCCTTTGTTAGGCCCTGCGCCCTTTATACTTGGAAAAAGGATGCGGCCAGAGGAGGATGGAAATGGTGGGAAGGATGATGGTGG GGTTCCTGTGGGCCCCACTATCGGGTCTTTAATGGGGCCCACAGCAACAGCCGCAGCGGGGTCTGGCGGGTTCTGGGCTTTGCCTGCAAGGGCTGATTTT TGGGGGTTTGCTGCTGCACCGCCGGAAATGGTTGTGCAGCCGACGGCGGTGCAGCAGTCGTCGCTGTTTATGCACCAGCAGCATGCTGCCGCCGCTGCTG CCATGGGAGAAGCGTCGGCGGCTAGATTGGGGAATTATCTTCCTGGTCATTTGAATTTGTTGGCTTCATTGTCGGGTGGGTCTGGGAGTTCAGGAAGGAG AGAGGAGGATCAGCGTTGA
AA sequence Show only first row Show all	>Potri.005G090300.3 pacid=42804133 polypeptide=Potri.005G090300.3.p locus=Potri.005G090300 ID=Potri.005G090300.3.v4.1 annot-version=v4.1 MSDNSGAVNNGALIDPQRNQPPGGGGGGGATNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG TTPASFSTVSVSVRAGGNSNSISSLSSNNVHSAASLDHKPLLGPAPFILGKRMRPEEDGNGGKDDGGVPVGPTIGSLMGPTATAAAGSGGFWALPARADF WGFAAAPPEMVVQPTAVQQSSLFMHQQHAAAAAAMGEASAARLGNYLPGHLNLLASLSGGSGSSGRREEDQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.005G090300 [exp]	0	1
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.004G180766 [exp]	6.00	0.7975
AT1G27190			Leucine-rich repeat protein ki...		Potri.017G138600 [exp]	7.93	0.7711
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Potri.014G165700 [exp]	9.21	0.8099
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	14.00	0.8073
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	15.58	0.8173
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.010G170900 [exp]	24.14	0.7735
					Potri.003G178500 [exp]	35.46	0.7827
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	36.33	0.7498
					Potri.017G119700 [exp]	37.09	0.7656
AT5G42680			Protein of unknown function, D...		Potri.014G035000 [exp]	39.98	0.7974

Compare expression of checked genes

Potri.005G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.