Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) AT1G55530 155 / 7e-45 RING/U-box superfamily protein (.1) AT3G13430 145 / 2e-41 RING/U-box superfamily protein (.1.2.3) AT5G56340 145 / 2e-40 ATCRT1 RING/U-box superfamily protein (.1) AT3G56580 134 / 3e-37 RING/U-box superfamily protein (.1.2.3) AT2G40830 134 / 6e-37 RHC1A RING-H2 finger C1A (.1.2.3) AT3G46620 132 / 1e-35 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G26400 131 / 1e-35 RING/U-box superfamily protein (.1.2) AT1G60360 124 / 3e-33 RING/U-box superfamily protein (.1) AT5G59550 120 / 2e-31 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074014 [exp] 409 / 1e-144 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 262 / 2e-86 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 254 / 2e-83 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 146 / 8e-42 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.003G223200 [exp] 146 / 6e-41 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 145 / 1e-40 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 142 / 3e-40 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.001G243300 [exp] 132 / 5e-36 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 131 / 6e-36 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010179 [exp] 236 / 4e-77 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 150 / 3e-43 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 148 / 2e-42 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10013397 [exp] 148 / 9e-42 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002637 [exp] 142 / 4e-39 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 141 / 2e-37 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10040278 [exp] 124 / 8e-34 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 122 / 4e-32 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031422 [exp] 121 / 4e-32 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10040783 [exp] 116 / 8e-31 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.005G090500.9 pacid=42804982 polypeptide=Potri.005G090500.9.p locus=Potri.005G090500 ID=Potri.005G090500.9.v4.1 annot-version=v4.1 ATGTCCTTCACCGGAGCTCCGCCACCACCCGGCGTGACCGCTGCAACAACGACCACACCGAAACAATACTTCTGTTACCAATGCAACCTTGCAGTCTCGA TAACTGTCTCTCCCTCTAATGACCCGTTTTGCCCAATTTGCCACGATAGCTTCATAGAAGAACTCGAGGCCCGAAACCCTCAAAACCCGAATCCATTATC CGAATCGGTTTTAAACGACCCTTTTGACCCCTTCTCTTCTCTTTTTCCTCCCCTCTTTCAAATCTCTGGCAATTTCTCTCATCCTGAATTTCAAATCCGA CCCGAATTATCTGACCAGAATGCGTTTAACCCATTTGATTTCCTACGTTCTCACCTCCAAAACCTCCATTCTGGTGGTGCTCGGGTCCAGTTCGTGATTG AGAACAATGGGGGCGAACAGGGAGGACTTCGATTCCCAGGTGGTAATTTTGGTGATTATTTTATTGGGTCGGGTTTGGAGCAACTGATCCAACAGTTGGC TGAAAATGATCCGAATAGGTATGGGACACCACCCGCGTCGAAGACGGCGATTGAGGCGTTGCCCACGATGAAAGTTACCGAGGAGATGATGAAATCAGAG ATGAATAATCAATGTGCTGTGTGTAAAGATGAGTTTGAGAGTGGAGAAGAAGTCAAGGGAATGCCTTGTAAACATGTGTTTCATGAGGATTGTATAATGC CTTGGTTGAAGATGCATAATTCATGTCCTGTTTGTCGATATGAGTTGCCTGCTGATGATCCTGATTATGAGAATAGAGCCACTGGAGGGCAAGGGAGTGG TGGTGGTAGTGGTGGAGGTGTGGAGAGAAGGTTTACTATTTCGATTCCTTGGGCGTCTGGTGGAGGTGGACAAAGCAGTTCTTGA
AA sequence Show only first row Show all	>Potri.005G090500.9 pacid=42804982 polypeptide=Potri.005G090500.9.p locus=Potri.005G090500 ID=Potri.005G090500.9.v4.1 annot-version=v4.1 MSFTGAPPPPGVTAATTTTPKQYFCYQCNLAVSITVSPSNDPFCPICHDSFIEELEARNPQNPNPLSESVLNDPFDPFSSLFPPLFQISGNFSHPEFQIR PELSDQNAFNPFDFLRSHLQNLHSGGARVQFVIENNGGEQGGLRFPGGNFGDYFIGSGLEQLIQQLAENDPNRYGTPPASKTAIEALPTMKVTEEMMKSE MNNQCAVCKDEFESGEEVKGMPCKHVFHEDCIMPWLKMHNSCPVCRYELPADDPDYENRATGGQGSGGGSGGGVERRFTISIPWASGGGGQSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19950			RING/U-box superfamily protein...		Potri.005G090500 [exp]	0	1
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	5.83	0.6814
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.001G314200 [exp]	14.83	0.6322	Pt-B5.3
AT3G49880			glycosyl hydrolase family prot...		Potri.005G148800 [exp]	17.05	0.6514
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	23.40	0.6333
AT2G34585			unknown protein		Potri.011G084300 [exp]	25.21	0.6170
AT5G62200			Embryo-specific protein 3, (AT...		Potri.012G130800 [exp]	25.74	0.5715
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.001G119800 [exp]	29.15	0.5463
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.005G100200 [exp]	34.29	0.5735
AT4G16695			unknown protein		Potri.003G078100 [exp]	35.62	0.5445
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.006G154000 [exp]	38.53	0.5375

Compare expression of checked genes

Potri.005G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.