Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08310 851 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 261 / 8e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 258 / 2e-75 RPF2 rna processing factor 2 (.1) AT1G63130 254 / 5e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 251 / 5e-73 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 252 / 1e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 246 / 4e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 241 / 1e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 235 / 2e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63400 234 / 2e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 267 / 4e-78 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 261 / 1e-74 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 257 / 1e-74 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 258 / 6e-74 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 245 / 2e-70 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 243 / 3e-70 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 238 / 1e-68 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 239 / 2e-68 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 237 / 3e-68 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042529 [exp] 263 / 2e-74 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 255 / 7e-73 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 253 / 2e-72 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 252 / 2e-71 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 252 / 3e-71 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 251 / 1e-69 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 238 / 1e-67 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 233 / 2e-64 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 231 / 3e-63 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 231 / 3e-63 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G090600.1 pacid=42804607 polypeptide=Potri.005G090600.1.p locus=Potri.005G090600 ID=Potri.005G090600.1.v4.1 annot-version=v4.1 ATGGCCTTATCAAAACTCACCATGAAACCCTTCCAAAACCTCTCCAAATCAATAAAAGCCAACAACCCATTTTCCATTTTCACTAAGAACCTGTGTGGCT TTCCCTTAGACTCCAGAAACATCACAAACGACCTCATTTCCATCTTCACAAAACAGCCCTTTTCCCCAAACAACCCTGAATTGGAGAGTCTTGCACCATT ACTAAACACTAAAGTTGTTGAAACCGTTTTGAATGGTTTAAAGAACTGGAAAATAGCTCTACATTTCTTTACTTGGGCATCAAATCAAGGTCCATATAAG CACAATGTGTATGCATATAATGCCATGGCTTCAATTCTATCACGTGCTCGACAAAAAGCCCCACTGAGAGCTTTATCTATGGATGTTGTGAATTCCAGGT GCTTGATGAGTCCTGGAGCCTTGGGGTTCTTGATTAGGTGTTTAGGTAATGCGGGGTTGGTTGTTGAAGCTAATTTGTTGTTTGATCAAGTTCAAAAGAT GGGTCTTTGCGTGCCGAATAGCTATAGTTATACTTGTTTGTTGGAGGTTCTTTCTAAGTCCATTTGTATTGATTTGCTTGAGATGAGATTGAAAGAAATG CATGATCATGGATGGGGTTTTGATAAGTATACTTTGACGCCGGTGCTGCAGGTGTATTGTAACATGGCCGAGTTTGATAAAGCTTTAGATGTTTTTAATG AGATTCACGATCGAGGTTGGGTTGATGAGTATGTGTTTTCCATCTTGGTGTTGGCTTTTAGCAAGTGGGGTAAGGTGGATAAGGCATGTGAGTTGATTGA AACAATGGAAGAAAAAAATGTAAGATTGAATAAGAAGACTTTTTGTTCTTTGATTTATGGATTTGTGAAGGAGTCTAGAGTGGATAAGGCCCTGCATTTA TTTGATAAGATGAAGAAATCTGGTTTTACTCCTGATATTTCACTTTATGATGTGATAATTGGAGGGCTTTGTGTGAATAAAGATGTTAAGAAAGCTTTGT GTTTGTATTCTGAAATGAAGGGATTTAAAATCCAGCCTGATGTGAAAATTGTTACTAAGCTCATATCTTCTTTTTCTAAAGAAGAAGAATTAACGTGCTT TTTTGAGGAAATGCATGAAGATATGGATCCAAAAGCTTCGACTTTGCTTTACAATTCTGTTCTGAATTCTCTTGTGGATAACGGTTCTGTACATAAAGCA TACCATCTTCTTCAGGCAATTACGATAGGTAACTGCATTGGTGATGGTGAGATAGGTAAGCTGTTCAGGGGTAAAGCAATGGTCCCCCCTAATAGTACCA CATTTTCTATTGTTATTAATGGCCTGATCAAGACTGGTGATTTGGACTTAGCTGTCGGTCTATTTCGAGATATGGCTCGAATTGGTTGTAAACCTGATTT GCTACTGTATAATAATTTAATTGATGGACTTTGCACTTCAAATAGATTGCAGGAAAGCTGTGGGCTTCTGCAAGAGATGGAGGAGTCAGGGATTGAACCA ACCTCATTCACTAACAACTGTATATTTGGGTGCCTATGCAGAAGACATGACATTTCTGGAGCCCTTCATCTATTAAAGAAGATGCGTATTCATGGCCACG TGCCATGGATAAAACATTCTACCTCTCTGGTAAAAGAATTGTGCAAGCATGGAAAGGAAGTAGAAGCTTGCAAATTTCTTGTGGATATGGCTGAAGAAGG TTTCCAACCTGATATAGTTGCTTATTCTGCATGCTTAGATGGATTGATCAAGATTCAAGAAGTTGATCAAGCTTTGAAGCTATTTCAGGACATATGTGCT CAGGGTTACTGTCCTGATGTGATTGCTTATAACATATTGATAAAGGGGCTTTGTAAGACCCAAAGAATTGCAGAAGCTCAAAATCTTTTGCATGAGATGG AGGAGAAGGGTCTTGTTCCCTCAGCCGTTACCTACAACACGCTTATAGATGGATTGTGCAAAACTGATCATCTTGAAGAAGCTATGCTTTTTCTCTCCAT GATGATTGAAAAAGAAAGGGAGCCCAATGTCATTACGTACTCTACTCTAATAAATGGGTTATGCAATGCTGGAAGACCTGATGATGCTCTTGTGCTTTGG AATGAAATGGGGAGAAAAGGGTGCACTCCTAGTAGTATTGCTTACATGGCCTTCATCCATGGTCTTAGTAATTGTGGTAGGCCAAATGAGGCTCTGGTTT ATCTCCGTGAGATGGAAGAGAGAGAGATGAAACCTGACACATATGTTTATGTAGGATTATTAAATGCTTTTCTTGTGGACTCAAACCAACCCTTGGCTTT TGAGATATTACAAGAGATGGTTGACAAGGGAAAATTCCCTGATCTGCATGATAAGAACCATATTAGTGTGAGAAATGCAATACTCAAATTCTCAGAAGAT GCCAGGACTTCTTCGAGCATTAAAAATCTCCTTGCAAAGGGCAGCATTCCATCAGCGAGCCTTTCAGTCACCGGAATTACAGATGGAGTTGAGCCTGCTA TTTAA
AA sequence Show only first row Show all	>Potri.005G090600.1 pacid=42804607 polypeptide=Potri.005G090600.1.p locus=Potri.005G090600 ID=Potri.005G090600.1.v4.1 annot-version=v4.1 MALSKLTMKPFQNLSKSIKANNPFSIFTKNLCGFPLDSRNITNDLISIFTKQPFSPNNPELESLAPLLNTKVVETVLNGLKNWKIALHFFTWASNQGPYK HNVYAYNAMASILSRARQKAPLRALSMDVVNSRCLMSPGALGFLIRCLGNAGLVVEANLLFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEMRLKEM HDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHL FDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKA YHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEP TSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICA QGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLW NEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKNHISVRNAILKFSED ARTSSSIKNLLAKGSIPSASLSVTGITDGVEPAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	0	1
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	1.00	0.9413
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	1.41	0.9410
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	4.00	0.9080
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	4.24	0.9298
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	4.47	0.9279
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	5.74	0.9149
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.014G119000 [exp]	5.83	0.8906
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	6.48	0.9204
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	6.70	0.9260
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	7.34	0.9061

Compare expression of checked genes

Potri.005G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.