Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 711 / 0 Major facilitator superfamily protein (.1) AT1G50310 704 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19930 673 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 667 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT1G11260 628 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 613 / 0 STP12 sugar transporter protein 12 (.1) AT5G26340 587 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 564 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 514 / 7e-180 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G61520 486 / 1e-168 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073850 [exp] 853 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 853 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 841 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 768 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 611 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 602 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.001G110400 [exp] 574 / 0 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.004G233500 [exp] 570 / 0 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G109765 [exp] 566 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 766 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10040991 [exp] 646 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10018422 [exp] 640 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 612 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10040993 [exp] 610 / 0 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10010534 [exp] 573 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 572 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 551 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 536 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10042516 [exp] 516 / 2e-180 AT1G11260 608 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G090700.1 pacid=42804460 polypeptide=Potri.005G090700.1.p locus=Potri.005G090700 ID=Potri.005G090700.1.v4.1 annot-version=v4.1 ATGGCCGGGGGAGCTTTTGTGGCGCATGGTTCTGGGAGGAAATATGAGGGTGGGGTCACATGCTTTGTTATCATCACCTGTTTGGTGGCTGCCATGGGTG GTCTCATTTTCGGTTATGACATTGGTATCTCAGGTGGTGTTACTTCTATGGACTCGTTTCTAAAACGATTCTTCCCATCTGTGTACAACAAAGAGCATGA AACTCGTGATGATAACAATATGTACTGCAAATTTGATAGCCATTTGTTGACATTGTTCACATCTTCCCTCTACCTTGCGGCTTTGGTAGCTTCCTTCTTT TCATCTACAGTGACAAGATTATTCGGCCGTAAAATCTCAATGTTGTTTGGAGGCCTGGTTTTCCTTGTTGGTGCCATTTTTAATGGTGCTGCGACCAATA TAGCAATGCTTATCATTGGTCGTTTGTTGCTTGGTGTTGGTGTTGGCTTTGCTAATCAGTCTGTTCCAATTTATCTATCTGAAATGGCACCAGCCCAAAT TAGAGGAGCACTTAACATTGGTTTCCAAATGGCCATTACAATTGGTATCCTGGCTGCAAATCTCATTAACTACGGAACAGCCCAAATCAAGGAGGGATAT GGCTGGAGAATTTCTTTGGGTCTTGCGGCTGTCCCTGCTTTGATGATCACTATTGGATCGTTCTTCCTTCCAGACACTCCCAATTCTATACTTGAGAGAG GCCACCCCGAGCAGGCAAAGAGAATGTTGCAAAAGATTCGTGGCACAGACAACGTTGAAGTAGAATTCCAAGACCTTGTGGACGCAACCGAGGCTGCAAA GAAAGTGGAACACCCATGGAAAAACATCTTGCAGCCAAAATACAGGCCTCAACTTGTCATTTGCACAATGATCCCATTCTTCCAGCAACTCACTGGAATT AATGTCATCATGTTTTATGCACCTGTTCTCTTTAAGACCTTGGGTTTCGGCGATGATGCTGCGCTTATGTCTGCAGTTATTACAGGCTTAGTAAATCTCG TCTGTACACTTGTTTCCGTCTACTCAGCTGATAGGTTCGGGAGAAGAATTTTGTTCCTAGAAGGAGGGGTTCAAATGATTATTAGCCAGATACTTGTTGG AATCATGATAGCCATCAACTTTGGGACACGAGGTGTAGGAGAATTGTCAAAGGGATCGGCCAACTTAGTTTTGTTCTTCATCTGTGCTTATGTTGCAGCA TTTGCCTGGTCTTGGGGTCCATTGGGATGGCTGGTGCCTAGTGAAATCTGCCCTCTTGAGATCAGATCAGCAGGGCAAGCCATCAATGTCTCAGTTAACA TGTTCTTCACTTTCTTAATTGGCCAGTTCTTCCTAAGCATGCTTTGCCACATGAAGTTTGGTCTCTTCTTGTTCTTTGCTGGCTTTGTTGTTCTCATGAC CATCTGCGTTTTCTTCTTCTTGCCCGAGACAAAGAATGTCCCAATTGAAGAAATGAACAGAGTGTGGAAGGCACATTGGTTCTGGGGCAAGTATATCCCT GATGATGCTGTCATTGGAAGCCAAACATATACTGCGTGA
AA sequence Show only first row Show all	>Potri.005G090700.1 pacid=42804460 polypeptide=Potri.005G090700.1.p locus=Potri.005G090700 ID=Potri.005G090700.1.v4.1 annot-version=v4.1 MAGGAFVAHGSGRKYEGGVTCFVIITCLVAAMGGLIFGYDIGISGGVTSMDSFLKRFFPSVYNKEHETRDDNNMYCKFDSHLLTLFTSSLYLAALVASFF SSTVTRLFGRKISMLFGGLVFLVGAIFNGAATNIAMLIIGRLLLGVGVGFANQSVPIYLSEMAPAQIRGALNIGFQMAITIGILAANLINYGTAQIKEGY GWRISLGLAAVPALMITIGSFFLPDTPNSILERGHPEQAKRMLQKIRGTDNVEVEFQDLVDATEAAKKVEHPWKNILQPKYRPQLVICTMIPFFQQLTGI NVIMFYAPVLFKTLGFGDDAALMSAVITGLVNLVCTLVSVYSADRFGRRILFLEGGVQMIISQILVGIMIAINFGTRGVGELSKGSANLVLFFICAYVAA FAWSWGPLGWLVPSEICPLEIRSAGQAINVSVNMFFTFLIGQFFLSMLCHMKFGLFLFFAGFVVLMTICVFFFLPETKNVPIEEMNRVWKAHWFWGKYIP DDAVIGSQTYTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	9.16	0.8382
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	10.77	0.8653
AT3G19940			Major facilitator superfamily ...		Potri.007G073900 [exp]	14.07	0.8071
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.002G072200 [exp]	23.40	0.8341
AT4G18650			transcription factor-related (...		Potri.004G058200 [exp]	24.49	0.7590
AT1G69430			unknown protein		Potri.006G159000 [exp]	25.69	0.8289
AT2G42910			Phosphoribosyltransferase fami...		Potri.002G059700 [exp]	27.87	0.7873
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G122800 [exp]	34.20	0.7543
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	35.63	0.8339
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.001G081400 [exp]	36.44	0.8014	Pt-LBD3.2

Compare expression of checked genes

Potri.005G090700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.