Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) AT3G63530 125 / 5e-34 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G47180 96 / 2e-23 RING/U-box superfamily protein (.1) AT5G52140 84 / 2e-18 RING/U-box superfamily protein (.1) AT3G15070 84 / 5e-18 RING/U-box superfamily protein (.1.2) AT4G34040 81 / 8e-17 RING/U-box superfamily protein (.1) AT2G15530 81 / 1e-16 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 81 / 1e-16 RING/U-box superfamily protein (.1) AT1G53190 76 / 5e-15 RING/U-box superfamily protein (.1.2) AT5G10650 76 / 5e-15 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073200 [exp] 300 / 5e-101 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.009G062100 [exp] 118 / 1e-31 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 117 / 4e-31 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.002G080900 [exp] 111 / 2e-29 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.003G204500 [exp] 111 / 7e-29 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G180300 [exp] 108 / 3e-28 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.001G019600 [exp] 108 / 8e-28 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.012G136400 [exp] 93 / 2e-22 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 91 / 3e-20 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017385 [exp] 197 / 2e-60 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 195 / 1e-59 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10016416 [exp] 126 / 2e-34 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 125 / 5e-34 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 116 / 7e-31 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 100 / 1e-24 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 90 / 2e-21 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10018140 [exp] 84 / 7e-19 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1) Lus10029693 [exp] 84 / 2e-18 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10025691 [exp] 81 / 9e-18 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G090800.1 pacid=42802912 polypeptide=Potri.005G090800.1.p locus=Potri.005G090800 ID=Potri.005G090800.1.v4.1 annot-version=v4.1 ATGGACGACGACGACAACAACAACAACAGCAGCAGCAACACAAAATTAGGTTCAGGAGAATCAAAAAACAACAACAGTGAACAACAAGAAGAGAACCCAA ATTTGAGCTCTAATGGAGAACAACAAGAAGGAGATGGAGAGAGAGAGGGTGGTGGTGGTGGTCCTCAACGTCAGACTTCAAGAAGAACTCCATTCACTAA TCTTAGTCAAGTTGATGCTGACCTTGCTCTTGCCAGGACCCTTCAAGAACAGGAAAGGGCATACATGATGCTAAGAATGAATAATGATGGGAGTGATTAT GGAAGTTGGGAAGCTGGAAGTTATTTACGTGATGATGAGGATGATTTTGGTGATCCCGATGACGAGACTGATGAAGATGATGACACAGATGTGGATGAGG CAGATGCATTTGATGCTGCTGCTGCTGCTGCTGATGCTGATGCTGGAGATCATGATAATACCGAAGTTGAAATTGACCCTTCTGTGTATTCCAGTGACGA GGCTTATGCCCGAGCCTTGCAGGAAGCTGAAGAAAGGGAGGTGGCTGCTAGACTGCTGGCCCTTGCTGGCTTAAATGATATTACAGGAGAAGCTGAGGAG GATACTGAAGAAGATCATGAGGATAATTCTCAGGATACATGGGAGGAGGTTGATCCTGATGAACTCTCATATGAGGAGTTGCTTGCATTGGGTGAAGTTG TTGGGACTGAAAGCAGAGGCCTTTCAGCTGATACAATTGCTTCTTTGCCTTCAATAAACTACAAGACAGGAAGCAGTCAGAATGGGAGCAATGATTCCTG TGTCATATGTCGTTTGGATTATGAGGATGGTGAAACTCTGACTCTGCTTTCCTGCAAGCATTCTTACCATTCAGAGTGCATAAACAATTGGTTGAAAATA AACAAGGCCTGTCCTGTTTGCAACACCGAGGTCTCCACTTCTGCGCACAGTTAG
AA sequence Show only first row Show all	>Potri.005G090800.1 pacid=42802912 polypeptide=Potri.005G090800.1.p locus=Potri.005G090800 ID=Potri.005G090800.1.v4.1 annot-version=v4.1 MDDDDNNNNSSSNTKLGSGESKNNNSEQQEENPNLSSNGEQQEGDGEREGGGGGPQRQTSRRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDY GSWEAGSYLRDDEDDFGDPDDETDEDDDTDVDEADAFDAAAAAADADAGDHDNTEVEIDPSVYSSDEAYARALQEAEEREVAARLLALAGLNDITGEAEE DTEEDHEDNSQDTWEEVDPDELSYEELLALGEVVGTESRGLSADTIASLPSINYKTGSSQNGSNDSCVICRLDYEDGETLTLLSCKHSYHSECINNWLKI NKACPVCNTEVSTSAHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	0	1
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	2.00	0.9186
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	4.24	0.8972	HMGB915
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	5.29	0.8896
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.013G025000 [exp]	6.70	0.8929	Pt-HAP5.3
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	9.79	0.8702
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	11.18	0.8801
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	11.48	0.8787
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	12.40	0.8744
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	12.64	0.8656
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	13.85	0.8578

Compare expression of checked genes

Potri.005G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.