Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 736 / 0 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G11950 643 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 627 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 593 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 395 / 6e-121 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 273 / 6e-77 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082901 [exp] 1246 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 654 / 0 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 630 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 621 / 0 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 462 / 1e-144 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.013G019000 [exp] 446 / 1e-139 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 432 / 6e-134 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G027000 [exp] 397 / 4e-124 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.014G170350 [exp] 49 / 7e-07 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015260 [exp] 837 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 647 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 641 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 620 / 0 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10025380 [exp] 477 / 2e-153 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 432 / 1e-134 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 432 / 1e-134 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020084 [exp] 420 / 7e-129 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 409 / 1e-126 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10004602 [exp] 392 / 4e-126 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.005G091200.2 pacid=42802497 polypeptide=Potri.005G091200.2.p locus=Potri.005G091200 ID=Potri.005G091200.2.v4.1 annot-version=v4.1 ATGGGAAATAGGAAGAGGAAGGTAAAGAAGAGTGAGATTGGAGCTGTTGAAGAGGAAAGGGAAGGTAATGGTGTGGAGAAAGGGGAAGAAGGTGATTTGA AGGAGGATGTCAGAAGGGGTAGGAAAAAAAAGAAGGGAAAGAAGAAAGAAAGTGATCGTGAGGAGGAGAAGGTGAAAGAAGAGAATGTGGAGGATGATGA AAAGGGGGTTTCTTCAGCTGTGGAGGGGAAGAAAAGGGTGGACTTTGTTGGGAATGAAGGAGAGAAAGAGGTGGAGAGTGGGGACGAAGATGGATTAGGT GAGAAAAGTGAAGTGGATTTCGTCAAGAAGGAAGAGAGAGGGGTTGATGGAAAGATGGATGGGAAGTCTAGGAAGGCAAAACAGGAGGTGGATGCCGAAG AAGGAGAGAAAGAGGTAGAAAATGGTAAAGAAGGAAAATTGGACGGGAGAAGGGAAGAGAAAGGGGCAGAGAAGAGGGGGCGGGAGGGAGGTAAATTCAG TGTGGATAACGAGGAAAGGAAAGAGATTGGAGAACTGGGTGTTGGAGGAAAGGAGAAGGTGAGATTTGTTAAGAATGAGGAAGAAAGCGAGGGGGTTAAG GAAAGTGAAGGGGCTGTTGCTAGAGAGAATAAGGGCGGGAAGAAGGAAAGTGAATCGGGTAATGAGGAGGTGGAGAGCGAGGTAGGGAAGGAGAATGGTG GTGATGTGGAAGAGAATGGCGATTCATTAAATAAGAGGCCGAGGAGAACTGATAAAAAGGTAAACTATGCTGAGCTTGATGCTGCATTAGATGAGGCAGT GCTTGGGGAGAAGCGCAGGAAGAGGAGGAAGAAGAATGGAGTCTCAGAGAGTGATGGATTGGAAAGTGTGCAAAATAGTAAAAATGGTGATGTCAATCGT GGAAAAAAGAAAGTTAGTCGAAAAGGAAAAAAGAATCAGGAGGAGGAGAATATCGAGGGAGAAGAAGAGAAGGAAGAGAGTGGCGAAGGAGATTGTTTGA TGATGAGCTCTGAAACAGGTTATGGGCTCAGGACTCGGAAAGAGCAAGTGGATCAGGGAAGCAAATCCAGGCGTGATAATGAGTTTATTGAGAATGTGTG TTTAATGTGTCATCAATGCCAGAGAAATGACAAGGGCCGTGTTGTTCGGTGTCTGAAATGTAAAAGGAAGCGCTATTGCATACCATGCTTGACGAAATGG TATCCTAAGATGACAGAGGATGAAATTGCCAATGCTTGTCCTGTCTGTCTTGGAAATTGCAACTGTAAATCTTGTTTGCGTCTGGATGCGCCGATTAAGG AACTGAAAAATTTAAACCTGGAAGTAAGCAAAGAAGAAGTAGTGCGATACTCTAAGTTTTTCCTTCGTGCGCTTCTTCCATTTTTGAAGCAGTTAGATGA AGAACAAATGATGGAGAGAGAGATTGAGGCCAGGAGAGAAGGTGTACCACTTGCAGGCTTACAAATAGAGAATGCTGAATGCCCTGCAGATGAGCGCATG TTCTGTGATAATTGCAGAACTTCTATTTTTGATTATCACAGAAGTTGCTCAAATTGCTCTTCTGATCTTTGTCTTGCCTGTTGTCGGGAGATCCGTGCTG GGCACTTGCAAGGTGGTGGGCCAGATGTGCTTATGGAATATATTAACAGAGGATTTGAATATTTGCATGGTGGGATAGACGAACCACAGGTTGAATCACA AGCTGAGTTACCTCAAAAGACTGAATCTAAGGATTTTATGGGGCCAAAGTCTGGATGGAAAGCAAATGAAGATGGAAGCATTCATTGTGCTTGTGATAGT GGCAATTTGGAACTAAAATGTTTGTTCCCAAACAAAAAAGTCAATTTTGCAGTTTCAGTGTCAGAGTTGGTAAAGAAAGTTGAAGAAATGTCCAAAAAAT GGGAAACTGACTCTGCTAATGCTCCTGATGAACGATGTGCTTGTTTTAACTCCAATGGTGATCTTGATATCAGTAATGGTAACAGGTTATTAAAAGCAGC ATGCCGAGAAGATTCTGATGATAACTATTTATTCTATCCAATAGCCGAAGATATCACAGAGGATGATTTGAAGCATTTTCAGTTTCATTGGAAGAGAGCT GAGCCTGTGATTGTTCGCAATGTGCTTGAAACTGCATCTGGTTTGAGTTGGGAGCCAATGGTCATGTGGCGTGCCTTCCGCCAGATCAAAAATGAAAAAC ACGACACACTATTGGATGTAAAGGCAATTGAGTGTCTGGATTACTGTGAGGTAGATATTAATGTCCATCAATTCTTCATTGGTTACACAGAGGGAAGGTT TGATGGTAAAAATTGGCCTCAGATACTGAAGCTGAAAGACTGGCCCCCATCTAAAACATTTGGTGAAAGTCTTCCACGACATGATGCTGAATTTACCTGT TGTTTGCCCTTTAAGGAGTATACACATCCACGCAGTGGACCTTTAAACCTTGCTGTCAGATTGCCTGAGAATTCTTTGAAGCCAGATATGGGGCCAAAGA CATATATTGCCTATGGATATCCTGAAGAGCTTGGGCGTGGAGATTCGGTCACTAAGCTTCACTGTGACATGTCTGATGCGGTAAATGTCTTGACGCATAC TGCTGATGTGTCCAATAAAACTCATTATACTGAAATACAAAAGTTGAAGCTAAAGCACTTTGAACAAGACCAAAGAGAGCTTTTTGGAAATAATCAGAAT GTGGATGGAGTTGATAAAAGAGAGCTTTTTGGAAATAATCAGAATGTGGATGAAGTTGATAACATGCATGGTGTTGATTCTGGGAAATGTAATGAGGAGG CAGGAGTGGTTCAAGGCATAAGTACCGAGGATGGACCTTTAAAGTGTGGAGATGAGTCAGAATGGATGGATGCTTTAGATGGAGGTGCTGTTTGGGACAT TTTCCGAAGAGAAGATGTTCCTAAGTTGCAGGAGTATCTCAACAAGCACTTCAAGGAATTTAGGCATATCCACTGTAGCCCATTACCAAAGGTGGTTCAC CCCATTCATGACCAGACATTTTTTTTTACTCTAGAGCACAAGAGGAAGCTAAAAGAGGAATATGGCATTGAACCATGGACATTTGTCCAGAAACTTGGAG ACGCTGTCTTCATTCCTGCAGGCTGTCCTCATCAAGTGAGAAACTTGAAGTCTTGCATTAAGGTAGCAATGGACTTTGTCTCACCTGAAAATGTAGGTGA GTGCATACGTCTGACAGAGGAATTCCGTTTGCTTCCTCCAAATCATCGGGCTAAAGAGGACAAGTTGGAGATAAAGAAAATGTATCTTCATGCTGCTAGA TGGGCTCTTGATGTTTTAACAAATGGTGGAGAAGTGGACGAACCTGAGAAGGTCAAGAAAAAGCAAGCTAGGAGCAAGAAGAGGTCATAG
AA sequence Show only first row Show all	>Potri.005G091200.2 pacid=42802497 polypeptide=Potri.005G091200.2.p locus=Potri.005G091200 ID=Potri.005G091200.2.v4.1 annot-version=v4.1 MGNRKRKVKKSEIGAVEEEREGNGVEKGEEGDLKEDVRRGRKKKKGKKKESDREEEKVKEENVEDDEKGVSSAVEGKKRVDFVGNEGEKEVESGDEDGLG EKSEVDFVKKEERGVDGKMDGKSRKAKQEVDAEEGEKEVENGKEGKLDGRREEKGAEKRGREGGKFSVDNEERKEIGELGVGGKEKVRFVKNEEESEGVK ESEGAVARENKGGKKESESGNEEVESEVGKENGGDVEENGDSLNKRPRRTDKKVNYAELDAALDEAVLGEKRRKRRKKNGVSESDGLESVQNSKNGDVNR GKKKVSRKGKKNQEEENIEGEEEKEESGEGDCLMMSSETGYGLRTRKEQVDQGSKSRRDNEFIENVCLMCHQCQRNDKGRVVRCLKCKRKRYCIPCLTKW YPKMTEDEIANACPVCLGNCNCKSCLRLDAPIKELKNLNLEVSKEEVVRYSKFFLRALLPFLKQLDEEQMMEREIEARREGVPLAGLQIENAECPADERM FCDNCRTSIFDYHRSCSNCSSDLCLACCREIRAGHLQGGGPDVLMEYINRGFEYLHGGIDEPQVESQAELPQKTESKDFMGPKSGWKANEDGSIHCACDS GNLELKCLFPNKKVNFAVSVSELVKKVEEMSKKWETDSANAPDERCACFNSNGDLDISNGNRLLKAACREDSDDNYLFYPIAEDITEDDLKHFQFHWKRA EPVIVRNVLETASGLSWEPMVMWRAFRQIKNEKHDTLLDVKAIECLDYCEVDINVHQFFIGYTEGRFDGKNWPQILKLKDWPPSKTFGESLPRHDAEFTC CLPFKEYTHPRSGPLNLAVRLPENSLKPDMGPKTYIAYGYPEELGRGDSVTKLHCDMSDAVNVLTHTADVSNKTHYTEIQKLKLKHFEQDQRELFGNNQN VDGVDKRELFGNNQNVDEVDNMHGVDSGKCNEEAGVVQGISTEDGPLKCGDESEWMDALDGGAVWDIFRREDVPKLQEYLNKHFKEFRHIHCSPLPKVVH PIHDQTFFFTLEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVAMDFVSPENVGECIRLTEEFRLLPPNHRAKEDKLEIKKMYLHAAR WALDVLTNGGEVDEPEKVKKKQARSKKRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	0	1
					Potri.004G088000 [exp]	1.41	0.8688
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	1.73	0.8783
AT2G06040			unknown protein		Potri.006G142200 [exp]	9.48	0.7980
AT5G49470			PAS domain-containing protein ...		Potri.008G105100 [exp]	9.64	0.7140
AT2G45590			Protein kinase superfamily pro...		Potri.002G150800 [exp]	10.67	0.6998
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Potri.007G046500 [exp]	11.09	0.6923
AT1G49520			SWIB complex BAF60b domain-con...		Potri.004G145200 [exp]	16.88	0.8428
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.005G124700 [exp]	19.89	0.7796
AT3G13670			Protein kinase family protein ...		Potri.003G215700 [exp]	21.16	0.7469
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	21.35	0.8296	SDG904

Compare expression of checked genes

Potri.005G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.